PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S002300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 182aa    MW: 20593.8 Da    PI: 10.7502
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S002300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000654769123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C+k F++   L  H  +H
  Manes.S002300.1.p 47 FECKTCNKKFPSFQALGGHRASH 69
                       89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.94E-846121No hitNo description
PfamPF139122.3E-124771IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.2634774IPR007087Zinc finger, C2H2
SMARTSM003550.0874769IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
PfamPF139121.5E-1098123IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3999126IPR007087Zinc finger, C2H2
SMARTSM003550.2899121IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKRTRDSAAE MERLDMAKCL ILLSHTLHNK NPRKHFKSHD DDDNHLFECK TCNKKFPSFQ  60
ALGGHRASHK KPKMATENKP RTEKFLTSLE TSTVKTKVHE CSICGVEFAL GQALGGHMRR  120
HRAAMTRRLN SSHARGVSKL PVLRRSTSSK RVFGLDLNLT PLENDLQYLF GKMAPKVDPF  180
I*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S002300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601993.11e-132zinc finger protein ZAT11
SwissprotQ9SLD48e-51ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A199UCC61e-131A0A199UCC6_MANES; Uncharacterized protein
STRINGcassava4.1_031442m1e-132(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-44C2H2 family protein