PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.S010300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 245aa MW: 26469 Da PI: 7.9151

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.S010300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.2	1e-41	41	140	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrrkCa++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r d+++slvyeA+ r+rdPvyG++g i++lqqq+++l++ Manes.S010300.1.p 41 PCAACKLLRRKCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPESQRADTANSLVYEANLRLRDPVYGCMGAISALQQQIQSLQE 132 7***************************************************************************************** PP DUF260 93 elallkee 100 e++++++e Manes.S010300.1.p 133 EINSIRSE 140 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.784	40	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-41	41	138	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MSRDRDRFDE IGKKIKRDTD LSSEMGRRHI LTPGILNTVT PCAACKLLRR KCAEECPFSP 60 YFSPHEPQKF AAVHKVFGAS NVSKMLMEVP ESQRADTANS LVYEANLRLR DPVYGCMGAI 120 SALQQQIQSL QEEINSIRSE IIKHKYREAN TSIISSTEHH HPAALVSSGT LSSIVVPQNI 180 PPLSPAPPPP PPPPPPPPPP PPLSAPSSIV VSSSSSSSIS SLYTPPTSST GYSSISSDNV 240 PYFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-43	32	148	5	118	LOB family transfactor Ramosa2.1
5ly0_B	4e-43	32	148	5	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.S010300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021602074.1	1e-176	LOB domain-containing protein 13-like isoform X1
Swissprot	Q9AT61	3e-76	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A199UCG4	1e-175	A0A199UCG4_MANES; Uncharacterized protein
STRING	cassava4.1_031391m	1e-175	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	7e-73	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Manes.S010300.1.p

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]