PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S015500.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 176aa    MW: 19276 Da    PI: 10.1605
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S015500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.51.7e-10152173122
                        ---SS-EEEEEEE--TT-SS-E CS
               WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                        ldDgy+WrKYGqK+vk++ +pr
  Manes.S015500.2.p 152 LDDGYKWRKYGQKVVKNTLHPR 173
                        59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-12137173IPR003657WRKY domain
SuperFamilySSF1182901.31E-9144173IPR003657WRKY domain
PROSITE profilePS5081112.633147175IPR003657WRKY domain
PfamPF031066.0E-7153173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MAAASQAMLN QGLFEEQEMP TQMGFFSFAP NSSFPLLGSC HQSLKGFTIP HSLAADAPST  60
ANLTETLLIS SAAAKQREDM SANLGGPHLF SVQRSSANLW TQGEVNEYLS NKRSGGDGHL  120
GVSALKMKKI KGRRKVREPR FCFKTMSDVD VLDDGYKWRK YGQKVVKNTL HPRIP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S015500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602135.11e-127probable WRKY transcription factor 13
SwissprotQ9SVB71e-26WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A199UC831e-128A0A199UC83_MANES; Uncharacterized protein
STRINGcassava4.1_015440m1e-127(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.15e-29WRKY DNA-binding protein 13