PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S015700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 220aa    MW: 24459.1 Da    PI: 8.6812
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S015700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.63.2e-12128102129
                NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
                        +kktLvfykgrap+gek++Wvmheyrle
  Manes.S015700.1.p   1 MKKTLVFYKGRAPRGEKSNWVMHEYRLE 28 
                        8*************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023656.6E-5127IPR003441NAC domain
SuperFamilySSF1019413.14E-16148IPR003441NAC domain
PROSITE profilePS5100522.639148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKKTLVFYKG RAPRGEKSNW VMHEYRLENK HPFKRTKEEW VVCRVFQKSS AAKKPQQTQS  60
SQQSLGSPCD TNSIVNEFGD IELPNLNNNV NSSNEFNNIS TQSNYSNQAN VDMNINVQNW  120
ASPSLSWPSS LLSPNLAINS LLLKALQLRS YQQREAAAAA ANAASSSDHY SFLTQGTSIP  180
QFGTDLNSNV QGSSSSSRVL ETVQQPVQQE QPFILDSIW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S015700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052140.0KR605214.1 Manihot esculenta NAC transcription factors 76 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602139.11e-158NAC domain-containing protein 100
TrEMBLA0A199UCA01e-159A0A199UCA0_MANES; Uncharacterized protein
STRINGcassava4.1_029418m1e-157(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-30NAC domain containing protein 58
Publications ? help Back to Top
  1. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]