PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S017200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 519aa    MW: 57277.7 Da    PI: 5.9512
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S017200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.19.7e-25205261259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         Dgy+WrKYGqK+vk+ + +rsYY+Ct+++C +kk +e++++ ++v+ei+++g+H h+
  Manes.S017200.1.p 205 PDGYSWRKYGQKQVKSPKGSRSYYKCTYSDCFAKK-IECADHSGHVIEIVNKGTHSHD 261
                        5********************************98.*********************7 PP
2WRKY96.22.2e-30379435359
                        -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++  ++++v+itY+g H+h+
  Manes.S017200.1.p 379 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVGNTNAVVITYKGVHDHD 435
                        9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-19204263IPR003657WRKY domain
SuperFamilySSF1182904.97E-19204263IPR003657WRKY domain
SMARTSM007747.6E-22204262IPR003657WRKY domain
PROSITE profilePS5081116.926206263IPR003657WRKY domain
PfamPF031061.1E-16206261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.4E-31362437IPR003657WRKY domain
PROSITE profilePS5081131.686372437IPR003657WRKY domain
SuperFamilySSF1182909.02E-27373437IPR003657WRKY domain
SMARTSM007741.4E-34377436IPR003657WRKY domain
PfamPF031061.6E-22379434IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MAERESLEAL QRQQNQKTHS EVQNDNNLEL EEGEVEDEEE EEEDEEEEEE SQLSELQQLP  60
DSQHVELSTS QVEELKESQL EGLVAAPSTQ ILSENHQCVG SRDNSALEPH VEAEFKGHEV  120
LGNLTTRHAE AQIQNEIQSS LCPTSLSELS PTSVTQPILS APSPTLPEIR QSPSKLNNVS  180
AQEADQQNSS DPKSLSVPIL KARIPDGYSW RKYGQKQVKS PKGSRSYYKC TYSDCFAKKI  240
ECADHSGHVI EIVNKGTHSH DPPRKNNPTR EIKVALSSAP VMSNSLKEHP ISTLKDSDQA  300
TLPKEPIKET PMSPEKKRQS SSGSDGNGRI QIKEEHISEP EPKRRVKKEN LECSDTLIKT  360
GKKPKFVVHA AGDVGISGDG YRWRKYGQKM VKGNPHPRNY YRCTSAGCPV RKHIETAVGN  420
TNAVVITYKG VHDHDMPVPK KRHGPPSAPL VAAAAPASMN NLQPKKTDTF QNQVTSTQWS  480
VGKEGELTSE TLDVGGEKEK AMESARTLLS IGFEIKPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-25365437274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S017200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602171.10.0probable WRKY transcription factor 32
SwissprotP595831e-136WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A199UBU80.0A0A199UBU8_MANES; Uncharacterized protein
STRINGXP_002529376.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-129WRKY DNA-binding protein 32