PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S025300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 211aa    MW: 24403.9 Da    PI: 9.4863
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S025300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-1956110357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                        k+++++++q++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Manes.S025300.1.p  56 KKRKLSAHQVNLLEVNFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKN 110
                        56689************************************************95 PP
2HD-ZIP_I/II117.76.4e-3856146292
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        kkr+ls++qv+lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+++++ e+++Le+ev +L+e+l 
  Manes.S025300.1.p  56 KKRKLSAHQVNLLEVNFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKNKKLEEEYTKLKTAHESIVVEKCHLESEVLKLKEKLL 146
                        9**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.35851111IPR001356Homeobox domain
SuperFamilySSF466891.67E-1753118IPR009057Homeodomain-like
SMARTSM003898.5E-1854115IPR001356Homeobox domain
PfamPF000461.3E-1656110IPR001356Homeobox domain
CDDcd000864.65E-1556112No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2058118IPR009057Homeodomain-like
PRINTSPR000318.4E-68291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000318.4E-691107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MTTTMNHSKV DQDHMALISQ LYPGVYTQMV PQQGETKPRR RRRKNRGGEN GVPGHKKRKL  60
SAHQVNLLEV NFGNEHKLES ERKDKLASEL GLDPRQVAVW FQNRRARWKN KKLEEEYTKL  120
KTAHESIVVE KCHLESEVLK LKEKLLEAEK EIQRLTERVD GVSSNSCSSL SMKAMNTPFL  180
GEFGIEGYGD IFYMPEINYI HGMEWVNLYM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13957RRRRKNRGGENGVPGHKKR
24158RRKNRGGENGVPGHKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S025300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602292.11e-157homeobox-leucine zipper protein ATHB-40-like
SwissprotQ9ZU707e-79ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A199UBK81e-156A0A199UBK8_MANES; Uncharacterized protein
STRINGcassava4.1_026937m1e-156(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-52homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]