PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S025700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 544aa    MW: 61258.3 Da    PI: 5.8063
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S025700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.62.7e-1211745432374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++ Ll cA+++s+ d  +a  l+  l++++s +g+pmqRl ay++e+L+ar+  s+s++y+al++ +     s + ++++ ++++++P+ kf
  Manes.S025700.1.p 174 KQMLLVCAQCISDADIPRAAGLMHVLEQMVSVSGEPMQRLGAYMLEGLRARVELSGSKIYRALKCDAPL---SPDLMTYMGILFKICPYWKF 262
                        789***************************************************************998...89999999************ PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        ++ +aN  I eave e  +HiiDf+i qG+QW+ L+++La+Rp+gpps+RiTgv++p+s   +   l+ +g++L+ fAe+++vpfef    a
  Manes.S025700.1.p 263 AYTAANVVIREAVEYEPIIHIIDFQIAQGTQWMFLIRSLADRPGGPPSVRITGVDDPQSAhaRGGGLHIVGQKLSCFAESCNVPFEFYD-DA 353
                        **********************************************************99889999**********************9.99 PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                        ++  +++ e+L v+pgEa++Vn+ + lh+++desv++ ++rd++L+lvkslsPkvv+++eqe+++n+++Fl rf e+leyy a+f+s++a++
  Manes.S025700.1.p 354 TSGCEVQREHLGVQPGEAVVVNFPYVLHHVPDESVNTWNHRDRLLRLVKSLSPKVVTLTEQESNTNTKPFLPRFKETLEYYNAMFESIDAGA 445
                        9******************************************************************************************* PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                         r++++ri+ E+++++r+ivn++acega+r+erhe ++kWr r+++aGF+++pl++++a+ ++ llr+++ + y ++e++g+l+l W++ ++
  Manes.S025700.1.p 446 FRDDKQRINAEQHCVARDIVNMIACEGADRVERHELFGKWRLRFSMAGFTQYPLTSTVASAVRDLLREYDRK-YGLQEKDGALYLWWMNTAM 536
                        **********************************************************************55.******************* PP

               GRAS 368 vsvSaWr 374
                         ++SaWr
  Manes.S025700.1.p 537 STFSAWR 543
                        ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.041147524IPR005202Transcription factor GRAS
PfamPF035149.2E-119174543IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MQTSQKHKNS AGIHGFYHQP QEIDPYGLSH IQILDNNVFS DVCSQGTTVS FQNYKEEYVT  60
LESSSATGGF VVYDSPAASV SSNRSPFSPQ GSHSCQSDPH HSPDNTYGSP MSGSSSADDD  120
NLLMRQKLRE LEFLLLGSES EITKKCDFCF HQADRLASWD WDQMVEMIPR LDMKQMLLVC  180
AQCISDADIP RAAGLMHVLE QMVSVSGEPM QRLGAYMLEG LRARVELSGS KIYRALKCDA  240
PLSPDLMTYM GILFKICPYW KFAYTAANVV IREAVEYEPI IHIIDFQIAQ GTQWMFLIRS  300
LADRPGGPPS VRITGVDDPQ SAHARGGGLH IVGQKLSCFA ESCNVPFEFY DDATSGCEVQ  360
REHLGVQPGE AVVVNFPYVL HHVPDESVNT WNHRDRLLRL VKSLSPKVVT LTEQESNTNT  420
KPFLPRFKET LEYYNAMFES IDAGAFRDDK QRINAEQHCV ARDIVNMIAC EGADRVERHE  480
LFGKWRLRFS MAGFTQYPLT STVASAVRDL LREYDRKYGL QEKDGALYLW WMNTAMSTFS  540
AWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-531755436375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S025700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602293.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A199UBY70.0A0A199UBY7_MANES; Uncharacterized protein
STRINGcassava4.1_005028m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13