PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S031700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family BBR-BPC
Protein Properties Length: 233aa    MW: 25271.9 Da    PI: 10.6043
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S031700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind248.73.9e-7652232118301
          GAGA_bind 118 qledsave..lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDes 206
                         l  +++   ++ +e  ++++  +++ +a+++k + k++++ + k +k k++kk s+k      k++++ +++k+ek+++++ ++ +++D s
  Manes.S031700.1.p  52 GLPVDPIRsvAPTTEPAKKNNSGTKPAKARKQKPSVKGSNQISSKISKPKQPKKASSK------KNGQNmPEAKREKRNLNVDVDRMNFDLS 137
                        3333333322344444455555555555566666666666666666666666663322......2222225689****************** PP

          GAGA_bind 207 tlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfv 298
                        ++P P CsCtG++r+CYkWG+GGWqS+CCt+tiS yPLP+s+ r+gaR+agrKmS+ga+ klL kLaaeG+dls+pvDLkdhWA+HGtnkfv
  Manes.S031700.1.p 138 GVPSPFCSCTGMPRVCYKWGAGGWQSSCCTITISEYPLPMSSARPGARMAGRKMSSGAYVKLLLKLAAEGHDLSHPVDLKDHWARHGTNKFV 229
                        ******************************************************************************************** PP

          GAGA_bind 299 tir 301
                         i+
  Manes.S031700.1.p 230 IIK 232
                        998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.2E-7629232IPR010409GAGA-binding transcriptional activator
PfamPF062171.2E-6971232IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGTYSNRSHI IPEASTGTSV PHFAWFYSGN FYSPPKTSSV HSQGTQIDSE PGLPVDPIRS  60
VAPTTEPAKK NNSGTKPAKA RKQKPSVKGS NQISSKISKP KQPKKASSKK NGQNMPEAKR  120
EKRNLNVDVD RMNFDLSGVP SPFCSCTGMP RVCYKWGAGG WQSSCCTITI SEYPLPMSSA  180
RPGARMAGRK MSSGAYVKLL LKLAAEGHDL SHPVDLKDHW ARHGTNKFVI IK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S031700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602375.11e-173protein BASIC PENTACYSTEINE7
RefseqXP_021602376.11e-173protein BASIC PENTACYSTEINE7
SwissprotO822862e-68BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A199UBE41e-172A0A199UBE4_MANES; Uncharacterized protein
STRINGcassava4.1_015308m1e-172(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1643089
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.42e-69basic pentacysteine 7