PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S035900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 224aa    MW: 26042.3 Da    PI: 9.6322
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S035900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM135.73.1e-42291581128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 
                        lp+G+rF P+d+el+ +yL +k+++++l+  + i+ vd+y++ P++L +  k++  +e++wyfF++r+kky++g+r++r a + gyWkatg+
  Manes.S035900.1.p  29 LPVGYRFAPSDDELIRYYLLRKINNEHLPP-NRIHVVDLYNYSPQQLAEtyKLNReRESQWYFFTSREKKYPKGSRPKRnARELGYWKATGT 119
                        799************************999.77**************842333332556********************77779******** PP

                NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        dk++l+ +++  g +k+L +y++r+++g+kt+W mhey l
  Manes.S035900.1.p 120 DKAILD-GKKPLGFRKSLDYYEERQRDGTKTNWKMHEYLL 158
                        ******.999****************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5024189IPR003441NAC domain
PROSITE profilePS5100547.6329190IPR003441NAC domain
PfamPF023654.8E-2330157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEQNQNKNKG VAADCSTSSD DVERYFNSLP VGYRFAPSDD ELIRYYLLRK INNEHLPPNR  60
IHVVDLYNYS PQQLAETYKL NRERESQWYF FTSREKKYPK GSRPKRNARE LGYWKATGTD  120
KAILDGKKPL GFRKSLDYYE ERQRDGTKTN WKMHEYLLHQ SLVPSGATAR GKNPLQPKQD  180
EWVLCKIYNN KAEGKKNKND KDGGTVNAET EIPLHSLYCV IIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-38211968174Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S035900.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602430.11e-167NAC transcription factor 29-like
TrEMBLA0A199UBM91e-166A0A199UBM9_MANES; Uncharacterized protein
STRINGEOY092704e-55(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15078714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-42NAC-like, activated by AP3/PI