PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S037600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23185 Da    PI: 7.5032
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S037600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.62.1e-25958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien   rqvtf+kRr g+lKKA+ELSvLCdae+ v ifs++gk+ye +
  Manes.S037600.1.p  9 KRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGVFIFSPHGKFYELA 58
                       79*********************************************965 PP
2K-box547.4e-19831778100
              K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedL..esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                        +++e+++   ++e++ Lkkeie Lq+ +R l+G +   +++++ eL  Le++Le  + +iRskK+e++ ++i+ l++ke  ++ +n++L+ k
  Manes.S037600.1.p  83 QAKETQSLDAKEEINMLKKEIEILQKGLRYLVGGGAehSQMTMDELLMLEKNLEIWICHIRSKKMEIMSKEIQLLKNKEGIMKAANQYLQDK 174
                        46777788899*********************86551179**************************************************** PP

              K-box  98 lee 100
                        +ee
  Manes.S037600.1.p 175 IEE 177
                        997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.408161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-29178IPR002100Transcription factor, MADS-box
CDDcd002658.92E-39276No hitNo description
PRINTSPR004042.5E-26323IPR002100Transcription factor, MADS-box
PfamPF003194.3E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-1885175IPR002487Transcription factor, K-box
PROSITE profilePS5129711.77389181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MARGKVQMKR IENPVHRQVT FCKRRSGLLK KAKELSVLCD AEIGVFIFSP HGKFYELATN  60
GSMQELVERY MKVSGGNMQP DEQAKETQSL DAKEEINMLK KEIEILQKGL RYLVGGGAEH  120
SQMTMDELLM LEKNLEIWIC HIRSKKMEIM SKEIQLLKNK EGIMKAANQY LQDKIEESVD  180
FSNFASMSPY PLTIQNEIFE F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-15192187MEF2 CHIMERA
6byy_B7e-15192187MEF2 CHIMERA
6byy_C7e-15192187MEF2 CHIMERA
6byy_D7e-15192187MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S037600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5189146e-62DQ518914.1 Populus tomentosa MADS box transcription factor (MADS2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602447.11e-148agamous-like MADS-box protein AGL12 isoform X1
SwissprotQ388415e-74AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A199UBJ71e-146A0A199UBJ7_MANES; Uncharacterized protein
STRINGcassava4.1_016582m1e-147(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-76AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]