PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S062500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 248aa    MW: 28403.7 Da    PI: 6.9623
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S062500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W++eEde+l  +v ++G  +W++ ++  g+ R++k+c++rw +yl
  Manes.S062500.1.p 14 RGAWSPEEDEKLRAYVLRYGHWNWRKLPKFAGLSRCGKSCRLRWMNYL 61
                       89******************99************************97 PP
2Myb_DNA-binding43.29.4e-1468112248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        g+ +++Ed+l+ + ++  G++ W++Ia++++ gRt++++k++w+++l
  Manes.S062500.1.p  68 GSYSQQEDDLIMKWHQDVGNK-WSLIAAKLQ-GRTDNEIKNYWHSHL 112
                        6789*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.621965IPR017930Myb domain
SuperFamilySSF466891.4E-2811108IPR009057Homeodomain-like
SMARTSM007172.2E-121363IPR001005SANT/Myb domain
PfamPF002491.3E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-221568IPR009057Homeodomain-like
CDDcd001671.20E-91661No hitNo description
SMARTSM007171.5E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129417.26666116IPR017930Myb domain
PfamPF002498.5E-1368112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2369114IPR009057Homeodomain-like
CDDcd001673.89E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVRAPFFDKS GLKRGAWSPE EDEKLRAYVL RYGHWNWRKL PKFAGLSRCG KSCRLRWMNY  60
LRPGVKHGSY SQQEDDLIMK WHQDVGNKWS LIAAKLQGRT DNEIKNYWHS HLKKIAKNKQ  120
NASGLKKVAS ETSQSDAREN AETHEAQVFF PNSPSHLILE SSPLSPETYS GKFSPITSDS  180
AHVTPQDQSW SAESFRSFEE SLGDFWTEPF VADSTYNQDV GFMPLSVFDY DDNVELLYQV  240
MQELPGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22121145106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S062500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602729.10.0transcription factor MYB15-like
TrEMBLA0A199UAQ10.0A0A199UAQ1_MANES; Uncharacterized protein
STRINGcassava4.1_023710m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.19e-57myb domain protein 15