PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.S095200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bZIP

Protein Properties

Length: 399aa MW: 43149.8 Da PI: 6.5715

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.S095200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.5	3.8e-10	200	248	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l + Manes.S095200.1.p 200 KRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLFQ 248 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-15	196	260	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.473	198	261	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.32E-10	200	251	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.1E-10	200	254	No hit	No description
Pfam	PF00170	6.3E-9	200	248	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.73E-24	201	250	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MEMQDPQDKH SLNPISNSNS NSNSHFDPNS QNVALKNPLP DAPSSTSMFS ARPASHHRRA 60 HSEMSFRLPD DMTMMMMDLS PSDPINGGGA GGGGRTGGGG GVGGGSSAGS FEEIGSEDDL 120 FSTYIDVDKL TGGGNVDGRN SMDHNNNNHG EGDKGASLTT TRPTHRHSNS VDGSAFGEVM 180 DAKKAMPPDK LAELWNLDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL 240 SAQLTLFQRD TTGLSTENTE LKLRLQAMEQ QAQLRDALNE ALKKEVERLK IATGETISPS 300 ESFNLGMNQM PYSPSIFFPF PQQPGPASHP NMQFPPFAHS QPNMPAQHLH QTHSHSFSEL 360 MKNDPLGRLQ GLDISSKGLN IVKSEGPSLS ASESSSTF*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MEMQDPQDKH SLNPISNSNS NSNSHFDPNS QNVALKNPLP DAPSSTSMFS ARPASHHRRA  60
HSEMSFRLPD DMTMMMMDLS PSDPINGGGA GGGGRTGGGG GVGGGSSAGS FEEIGSEDDL  120
FSTYIDVDKL TGGGNVDGRN SMDHNNNNHG EGDKGASLTT TRPTHRHSNS VDGSAFGEVM  180
DAKKAMPPDK LAELWNLDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL  240
SAQLTLFQRD TTGLSTENTE LKLRLQAMEQ QAQLRDALNE ALKKEVERLK IATGETISPS  300
ESFNLGMNQM PYSPSIFFPF PQQPGPASHP NMQFPPFAHS QPNMPAQHLH QTHSHSFSEL  360
MKNDPLGRLQ GLDISSKGLN IVKSEGPSLS ASESSSTF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	100	GGRTGGGGG
2	95	105	TGGGGGVGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.S095200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021603088.1	0.0	transcription factor RF2b-like
Swissprot	O22873	1e-105	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A199U9C5	0.0	A0A199U9C5_MANES; Uncharacterized protein
STRING	cassava4.1_013312m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	6e-98	bZIP family protein

Link Out ? help Back to Top
Phytozome	Manes.S095200.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]