PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0001s0020.4.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 482aa    MW: 54498.2 Da    PI: 8.3767
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0001s0020.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix561e-1737113171
             trihelix   1 rWtkqevlaLiearremeerlr......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                          rW+++e+l+L++a+++ +e+l+      r+  +  +We v++++++ g+er++ qC+++w  l ++ykk+ke++++ 
  Mapoly0001s0020.4.p  37 RWSQHETLVLVAAKKRQGEELSpaiprpRNLTADERWELVAAYCKANGCERNAYQCRKRWFALYGDYKKVKEWQRSS 113
                          8********************9444433346899****************************************985 PP
2trihelix50.94e-16207285172
             trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                          rW+ +e l L++a+++ e++++ +        ++  +We++s+++r  g+er++ qC+++w+ l +++k+i+e++k  t
  Mapoly0001s0020.4.p 207 RWSLHESLILLAAKKKQEDDSGMAPkarartvSADERWESISAHCRTNGCERNAYQCRKRWSALLGDFKRIREWQKLST 285
                          8**************9999999543344555699*****************************************9853 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.22430100IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.6E-433101IPR009057Homeodomain-like
SMARTSM007170.1534102IPR001005SANT/Myb domain
PfamPF138373.1E-1236116No hitNo description
PROSITE profilePS500907.155200271IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-4201271IPR009057Homeodomain-like
SMARTSM007170.34204273IPR001005SANT/Myb domain
PfamPF138372.2E-8206286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEAGGEVVGD LGVDGEPVAV PIEQVDESAE RQNRNPRWSQ HETLVLVAAK KRQGEELSPA  60
IPRPRNLTAD ERWELVAAYC KANGCERNAY QCRKRWFALY GDYKKVKEWQ RSSAETYWGM  120
KNDRRRENRL PGTFDRVVFQ SMDSWLKISS DAQFDTPTRP DEGISSEIEQ DVEGQELPDI  180
ARGDGNSIVP RSEQTGDLGD KRYRNPRWSL HESLILLAAK KKQEDDSGMA PKARARTVSA  240
DERWESISAH CRTNGCERNA YQCRKRWSAL LGDFKRIREW QKLSTESYWL MKNEKRKENK  300
LPAIFDYEVF VNMDSWVGKR TGKKSGAAPE FLDCARPANG RLFPDVEHDR EGHLEPVPLI  360
GGCQRNTTLA PEMGPTLREE MPSDSTARKK RKRGMNGDAS DFKGQQLAAV FKSSVKAMQA  420
ALAENTQMQI QAHHTNIQAQ IEAHNLNSQL DRTQRKEQGE SLVGVLGKLA EALGKIAEKL  480
V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386394ARKKRKRGM
2387392RKKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XUZ50.0A0A2R6XUZ5_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-38Trihelix family protein