PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0001s0061.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 1280aa    MW: 140492 Da    PI: 5.1263
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0001s0061.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-16611657148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd  l ++v+++G  +W++Ia ++  gR +kqc++rw+++l
  Mapoly0001s0061.1.p 611 KGQWTPEEDRYLMELVERHGHQRWSLIATYLK-GRIGKQCRERWHNHL 657
                          799****************************9.*************97 PP
2Myb_DNA-binding54.42.9e-17663705145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          r+ W teE+e lv a+++lG++ W+ Ia++++ gRt++ +k++w+
  Mapoly0001s0061.1.p 663 RDGWNTEEEEALVSAHNKLGNR-WADIAKMIP-GRTENAIKNHWN 705
                          567*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.862606661IPR017930Myb domain
SuperFamilySSF466896.12E-30608704IPR009057Homeodomain-like
SMARTSM007171.3E-15610659IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-27612664IPR009057Homeodomain-like
PfamPF139211.0E-17614674No hitNo description
CDDcd001673.66E-14614657No hitNo description
PROSITE profilePS5129419.42662712IPR017930Myb domain
SMARTSM007178.7E-16662710IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-20665711IPR009057Homeodomain-like
CDDcd001676.99E-12666705No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1280 aa     Download sequence    Send to blast
MPSNAAPSPS GPLSPRAEAA LSPEGPLLRE SNAQPFFVLE GRTHRSAMTG GKNSLIELDT  60
LGLGYALGHL LYCPSTEVLP TCLETQSGVN LSGSSEVSHS ESGFERQSTL FHEEASNPQH  120
PISLQNFQRR LSLTANFSSD YRDLHGERKS VFEIYRTVKG PRRGRKRDKC TFEQKFKLAS  180
DWQSPGIDKA ETHFPSLVAE MDSEWGSELT KEGETQPVAK NPVELQPIEV ASWWCEKRAK  240
TNKHMDYQSN FGLHQAEWPN GEGSLKRPLV WKNLPEKKAL SAEGASEAYK QSTTLGLDGR  300
DSRNLDPALN TLEIVSRNKD GPNEGQAFAS ICSRAVEASP STHFQTTDHD INNSSIGSLS  360
LGTVDCQEGT QDLNGYWKHL QERRHLNSVE RIERLPEFEN SQSSCGKEAN IDGNTSQLQQ  420
LMGIQEENSL RCLDMGAGEA SDRTNCVEAP GKDDIRRLSA DYGDGFDAGE SWSQGVCVGP  480
GDCYLLTSVH KAQLLDLQLE ENQRYRQQQS SERSRESLSL DNDARLDCGQ SNKRDAEEDG  540
SSPGGFGGLV TQRQNYFADE CSLEMQRTSG EQLTAREAYE KALNEQHDDM PGKRMFKRSS  600
KGGPRRPNII KGQWTPEEDR YLMELVERHG HQRWSLIATY LKGRIGKQCR ERWHNHLRPD  660
IKRDGWNTEE EEALVSAHNK LGNRWADIAK MIPGRTENAI KNHWNATMRR KDLRRKHRKA  720
VDGSTDGLEV VPRCTVLRDY QQKVIQFTEQ KGSSATPENG RDRLRSLEEA HARTPDLDSP  780
QVTCDSTAGW SYDRSVGSNQ LEDNSYQQLE TRTNPDMSPA EVDQLLQMIW AQDQGEEGVQ  840
FATSLNPQGN LVLQANTFGP FGAFHGPFTL QTRVSVWGQG TGSGSYSSPQ VTVWGGGWGG  900
SSMYDSGTTQ ATGGAAGAEM WDGVTSTFPP AGYVASSSPS SKPLKPDSQH GESCPPALTP  960
CGCCNEANFH SIPQDLQSLN ITRAHFVSCS ETGRDGHSMP YPLEAEQSST CKGSIMEAPA  1020
VLEANSKATA GESNPLTAQP FQIENLLPSP LNDVPGAHAC FQRSSLSLDY SQNFAGAQSQ  1080
STACISELLA HEKVLESLAN YNLSVAAENT KMIHGHQLQQ PSSTTLQEGI SVEFNTCQAL  1140
PLDAFSTSAA ELINVQSVPP YQPAPSGDYD KSESRSNDAT HVLNHSGAVM DMCFLHENIT  1200
GRGNSNSNAG PPFSMVSQED WMRSNFVEHA AGEQAKGGVV SQYGEDLVEF TPIPVDLGYY  1260
VRKGGVCCGW GDEYGSCGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-456097112104C-Myb DNA-Binding Domain
1msf_C5e-456097112104C-Myb DNA-Binding Domain
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XV650.0A0A2R6XV65_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.19e-53myb domain protein 119