PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0003s0164.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

Trihelix

Protein Properties

Length: 303aa MW: 33605.9 Da PI: 9.2969

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0003s0164.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.2	4.9e-14	42	126	2	80
trihelix 2 WtkqevlaLiearremeerlrrg......klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 Wt e l++ + rre+ er +g ++++ +W+++ ++++++g++rs+ qC++kwe ++ ++kk+++ ek +++ s ++ Mapoly0003s0164.1.p 42 WTVAELLVMQASRREDFERQAKGgigekhRSAQERWRWIEDQCWAQGVKRSAAQCQDKWECIAAEFKKVNDYEKAIPPGQPSYWQ 126 88888888888888777777765333333599******************************************98776666654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.1E-10	41	127	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MAGYDPTTPG GMSQDNAVMV LAAGSMGDSD NPKNRSHRKG MWTVAELLVM QASRREDFER 60 QAKGGIGEKH RSAQERWRWI EDQCWAQGVK RSAAQCQDKW ECIAAEFKKV NDYEKAIPPG 120 QPSYWQMGSD DKKKYKLPPN FHEEVFLALR DWYGKTNLRS IEPVTILFDT PAPSRAGGTD 180 LITGGFHGNS AAANLDFSGS PGGESDENDT GRSSKRRKSM IKMADSLAAV LERNNKNMVA 240 ALRESEKRKD IRHQKTLDFE REKLKATMEL QLQLGNGYIG ALAKIGDGLD KIGSAMWAHG 300 RP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024400069.1	1e-108	trihelix transcription factor ASR3-like isoform X2
TrEMBL	A0A176VTV1	0.0	A0A176VTV1_MARPO; Uncharacterized protein
TrEMBL	A0A2R6XT51	0.0	A0A2R6XT51_MARPO; Uncharacterized protein
STRING	PP1S26_50V6.1	1e-102	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1881	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-20	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Mapoly0003s0164.1.p