PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0005s0152.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

NF-YC

Protein Properties

Length: 286aa MW: 31573.2 Da PI: 6.0057

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0005s0152.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.7	1.1e-55	78	182	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw++q ie+++dfk h+lPlarikki+kadedv+misaeaPvl++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtd Mapoly0005s0152.1.p 78 QLQMFWHSQmneIEQVSDFKTHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTD 167 89***9977789************************************************************************ PP NF-YC 88 ifdflvdivprdelk 102 ifdflvdivprdelk Mapoly0005s0152.1.p 168 IFDFLVDIVPRDELK 182 **********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.26E-34	55	172	IPR009072	Histone-fold
Pfam	PF00808	1.6E-21	100	163	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.0E-37	101	178	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048586	Biological Process	regulation of long-day photoperiodism, flowering
GO:0051247	Biological Process	positive regulation of protein metabolic process
GO:2000905	Biological Process	negative regulation of starch metabolic process
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MDMAQQPMNM MPGQQQMQYP QMAQNPQMQA QMQQPYPQGS PGVPSPPGPS GQPQGPYPGA 60 LAQQQVSFQH LQQQHQQQLQ MFWHSQMNEI EQVSDFKTHQ LPLARIKKIM KADEDVRMIS 120 AEAPVLFAKA CEMFILELTL RSWIHTEENK RRTLQKNDIA AAITRTDIFD FLVDIVPRDE 180 LKDETALGGV PRAALPVGSP ADAIPYGGGM YYVATGQPQG GPPMQQGQPN MMGSPAMMVG 240 RPGMPMDPAM YGQQARPPTM QYMPPQSMQQ MWPQSGSSPG IPPSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-57	85	178	2	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	156	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024386834.1	5e-81	nuclear transcription factor Y subunit C-2-like
Refseq	XP_024386835.1	5e-81	nuclear transcription factor Y subunit C-2-like
Swissprot	Q9SMP0	4e-70	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A2R6XQY9	0.0	A0A2R6XQY9_MARPO; Uncharacterized protein
STRING	PP1S51_318V6.1	2e-80	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	9e-63	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Mapoly0005s0152.1.p

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]