PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0005s0212.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family GATA
Protein Properties Length: 372aa    MW: 39140.1 Da    PI: 6.1707
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0005s0212.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24e-17269303135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C t  Tp+WR gp g+ktLCnaCG++y++ +l
  Mapoly0005s0212.1.p 269 CMHCSTQRTPQWRAGPMGPKTLCNACGVRYKSGRL 303
                          99*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.5E-709356IPR016679Transcription factor, GATA, plant
SMARTSM004016.6E-14263313IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.213263299IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-14265326No hitNo description
CDDcd002021.26E-12268313No hitNo description
Gene3DG3DSA:3.30.50.106.6E-14268301IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440269294IPR000679Zinc finger, GATA-type
PfamPF003206.2E-15269303IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MELSSTFAGA CPVIMGEAFH IDDLLDFSNE DIAGPIGEGL LSSLDSTITD VETISTTGSP  60
SLAGTKHILD GDDVVAGDLC VPCDDLAELE WLSKFVEDSF SMGEATRPVT SSGGLTVSTD  120
VQIESYTNKD RDRFQSASPV SVLESSASSE RASNLYRELS VPGRARSKRA RTGGRGWGTT  180
ARILSSSSNS GSGSGSGSGS GNDTESLSSD SNAMTGGGNS SSQTLSVDSQ ATPSAAMIAP  240
KAVSSSAKKP WKASKSGKKG QDASQPWRCM HCSTQRTPQW RAGPMGPKTL CNACGVRYKS  300
GRLLPEYRPA GSPGYIGHKH SNSHKKILEM RRQREQQQQS QPSSMLSSSS CQVSPNHLLE  360
LEDPDICNSQ S*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358213.14e-89GATA transcription factor 9-like
TrEMBLA0A176VU140.0A0A176VU14_MARPO; GATA transcription factor
TrEMBLA0A1L7B5390.0A0A1L7B539_MARPO; GATA transcription factor
STRINGPP1S241_7V6.12e-88(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-34GATA transcription factor 9