PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0006s0154.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family HB-other
Protein Properties Length: 425aa    MW: 45553.6 Da    PI: 5.5521
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0006s0154.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.22.1e-061476656
                         S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
             Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                         +ft+ ++ e+e++      ++p ++  ++L+++            ++ +qV +WFqNrR  +k
  Mapoly0006s0154.1.p 14 RFTAREVSEMEKALDAnkGSTPARSVVQHLSDSFsasadragqkPIQWKQVWNWFQNRRHSQK 76
                         588899999999998533679999999999999999999999999**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0045882IPR001356Homeobox domain
SuperFamilySSF466893.12E-71376IPR009057Homeodomain-like
CDDcd000860.005491476No hitNo description
Gene3DG3DSA:1.10.10.606.0E-51481IPR009057Homeodomain-like
PROSITE profilePS500719.1181478IPR001356Homeobox domain
PfamPF167191.6E-40122249IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MGRAPGSGGA PAFRFTAREV SEMEKALDAN KGSTPARSVV QHLSDSFSAS ADRAGQKPIQ  60
WKQVWNWFQN RRHSQKAKIA RSPDKVKAVT AAAPEPSHPK RVATTSAAVP SAAAGRRGND  120
AQMEFEAKSA RDGAWYDVST FISHRLATTG DPEVRVRFAG FGSEEDEWVN VRTAVRQRSL  180
PCEASECVAV LPGDLILCFQ EGNEQALYYD ADILDVQRRR HDVRGCRCRF WVRYRHDQAE  240
EVVPLRKVCR RPETEYRLLK LQSYGKNPSA EATQNAAPKA EDTPGAAVND VAGTGPANSS  300
EAVAQASATP TPASTTSAQA AIGTEAVPSS SAPEIDPPSD AATLSAGPAE MVVTSSSVPI  360
VPEQILPTVP PQVVEETKGA VEKSGQQVVE ISAPSMQAES EMYDQSESIV VLDRVDLEGS  420
RSNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-491212532134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-491212532134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-491212532134SHH1 SAWADEE
4iur_B3e-491212532134SHH1 SAWADEE
4iut_A3e-491212532134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-491212532134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-491212532134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-491212532134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-491212532134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-491212532134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358426.11e-134protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
RefseqXP_024358427.11e-134protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
RefseqXP_024358428.11e-134protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
RefseqXP_024358429.11e-134protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
SwissprotQ8RWJ71e-112SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2R6XQ050.0A0A2R6XQ05_MARPO; Uncharacterized protein
STRINGXP_010275166.11e-122(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16411419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-95sequence-specific DNA binding transcription factors;sequence-specific DNA binding