PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0006s0226.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 450aa    MW: 48853.8 Da    PI: 6.4459
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0006s0226.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd++l d++ ++G g+W+t ++  g+ R++k+c++rw +yl
  Mapoly0006s0226.1.p 14 RGPWTREEDLKLTDYISKHGEGCWRTLPKNAGLLRCGKSCRLRWINYL 61
                         89******************************99************97 PP
2Myb_DNA-binding50.93.7e-1667112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ ++eEd l++ ++ +lG++ W++Ia +++ gRt++++k++w+++l
  Mapoly0006s0226.1.p  67 RGNISEEEDNLIITLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                          7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.459961IPR017930Myb domain
SuperFamilySSF466894.49E-2911108IPR009057Homeodomain-like
SMARTSM007171.6E-131363IPR001005SANT/Myb domain
PfamPF002491.0E-141461IPR001005SANT/Myb domain
CDDcd001675.25E-111661No hitNo description
PROSITE profilePS5129427.362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2665116IPR009057Homeodomain-like
SMARTSM007179.7E-1766114IPR001005SANT/Myb domain
PfamPF002491.1E-1467112IPR001005SANT/Myb domain
CDDcd001671.73E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010224Biological Processresponse to UV-B
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0090378Biological Processseed trichome elongation
GO:1903086Biological Processnegative regulation of sinapate ester biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGRAPCCEKV GLNRGPWTRE EDLKLTDYIS KHGEGCWRTL PKNAGLLRCG KSCRLRWINY  60
LRPDLKRGNI SEEEDNLIIT LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLKKKLRSMG  120
IDPNSHRPLS QAAMAVGSHI SQESNVSPCC TLAPQQQIAA IKPNCKTFQS LSMAHQAELN  180
GAMMPQCIMK DESYQTMALV ESFLRDNTVY AESQALPQLR EHCSAATGGG CGGGGGGGGG  240
GAAATAPISH RSNYMSLDKS ESLSMLSPCS PVSILQHCSL STDREKSPSS QALTDFTTSH  300
SDFDHKQALG GMTFGESPSL TSESTASSGF LQVDRGTPTS YEPVPAAAAW GAQLSTSLPL  360
VNSLDMSADH RKRYQEATDI SSTNCPNFQK MLFNEDVLSP WDMEILQPLG DSLGDHAEMD  420
PNAFHCSSNN PATLWDSEMT HSNQLPTAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29121165108B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00053PBMTransfer from AT1G22640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VUA80.0A0A176VUA8_MARPO; Uncharacterized protein
TrEMBLA0A2R6XQ290.0A0A2R6XQ29_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.16e-75myb domain protein 3