PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0007s0056.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

bZIP

Protein Properties

Length: 466aa MW: 49937.1 Da PI: 7.5681

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0007s0056.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.7e-10	295	353	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l +l+ l++e+ Mapoly0007s0056.1.p 295 KRAKRILANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTMLQRDTTGLTTEN 353 9*********************************************9998887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.1E-17	291	355	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.151	293	356	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.95E-11	295	347	No hit	No description
Pfam	PF00170	4.3E-9	295	352	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.1E-11	295	349	No hit	No description
CDD	cd14703	9.82E-26	296	345	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MDGLGDGYEA FVERLQSDFA ATSAAKNSGQ NGNTTTHSSH PPHPSQSQLH QSRYVGYPSP 60 THAFTVKREA SPSVSESSMR TANSLSIEVS MQDQVTSPGP PSVTGPSSSR NPSPANNYST 120 DVNQMPDTPP RRRGHRRAQS EIAFRLPDDV SFERDLGMHG SEMPALSDDA AEDLFSMYID 180 MEKINSFSAT SAPLPGPKST AADSGSTPPP THHSRSLSVD GVLSGFNSGR GSMGLSGGSA 240 GFPSDGRRSR HQHSSSMDGS TSFKHDLLAA ELDGADAKKV MNSAKLADIA LIDPKRAKRI 300 LANRQSAARS KERKMRYISE LERKVQTLQT EATTLSAQLT MLQRDTTGLT TENSELKLRL 360 QAMEQQAQLR DALNEALRDE VQRLKVATGQ MNGLTGHVYG LGQGPLTAQQ LQQLQQQSSQ 420 QQAHNDFLQR GTFGGLQTMS GQIGGSFIKS EGSTISVNQG SSASF*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MDGLGDGYEA FVERLQSDFA ATSAAKNSGQ NGNTTTHSSH PPHPSQSQLH QSRYVGYPSP  60
THAFTVKREA SPSVSESSMR TANSLSIEVS MQDQVTSPGP PSVTGPSSSR NPSPANNYST  120
DVNQMPDTPP RRRGHRRAQS EIAFRLPDDV SFERDLGMHG SEMPALSDDA AEDLFSMYID  180
MEKINSFSAT SAPLPGPKST AADSGSTPPP THHSRSLSVD GVLSGFNSGR GSMGLSGGSA  240
GFPSDGRRSR HQHSSSMDGS TSFKHDLLAA ELDGADAKKV MNSAKLADIA LIDPKRAKRI  300
LANRQSAARS KERKMRYISE LERKVQTLQT EATTLSAQLT MLQRDTTGLT TENSELKLRL  360
QAMEQQAQLR DALNEALRDE VQRLKVATGQ MNGLTGHVYG LGQGPLTAQQ LQQLQQQSSQ  420
QQAHNDFLQR GTFGGLQTMS GQIGGSFIKS EGSTISVNQG SSASF*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024356505.1	0.0	transcription factor RF2a-like
Refseq	XP_024356506.1	0.0	transcription factor RF2a-like
Refseq	XP_024404099.1	0.0	transcription factor RF2a-like
Swissprot	Q04088	2e-87	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A2R6XND5	0.0	A0A2R6XND5_MARPO; Uncharacterized protein
STRING	PP1S20_116V6.1	0.0	(Physcomitrella patens)
STRING	PP1S20_118V6.1	0.0	(Physcomitrella patens)
STRING	PP1S20_119V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP126	17	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	2e-83	bZIP family protein

Link Out ? help Back to Top
Phytozome	Mapoly0007s0056.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]