PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0007s0265.3.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 678aa    MW: 77003.5 Da    PI: 4.7721
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0007s0265.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.3e-152266348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          W++eEdell + v+ +G ++W+++a+ ++ g+t  qc+ rw+++l
  Mapoly0007s0265.3.p 22 VWSQEEDELLREQVRVYGIERWARVAEGLP-GKTSRQCRRRWNMFL 66
                         6*****************************.************986 PP
2Myb_DNA-binding47.83.3e-1572114145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          rg WT eEd ll++ + ++G++ W+ Ia+ ++ gRt++ +k+r+ 
  Mapoly0007s0265.3.p  72 RGGWTDEEDNLLLENHDRFGNR-WTEIAKNLP-GRTDNAVKNRYS 114
                          789*******************.*********.**********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8751166IPR017930Myb domain
SuperFamilySSF466899.52E-2619113IPR009057Homeodomain-like
SMARTSM007176.6E-131968IPR001005SANT/Myb domain
PfamPF002497.9E-132265IPR001005SANT/Myb domain
CDDcd001672.01E-132366No hitNo description
Gene3DG3DSA:1.10.10.606.1E-192377IPR009057Homeodomain-like
PROSITE profilePS5129420.94767121IPR017930Myb domain
SMARTSM007171.5E-1571119IPR001005SANT/Myb domain
PfamPF002495.5E-1472113IPR001005SANT/Myb domain
CDDcd001673.07E-1175113No hitNo description
Gene3DG3DSA:1.10.10.601.8E-1878119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MKPSGARRFD NNEVRRGRPL VVWSQEEDEL LREQVRVYGI ERWARVAEGL PGKTSRQCRR  60
RWNMFLNVVS KRGGWTDEED NLLLENHDRF GNRWTEIAKN LPGRTDNAVK NRYSVLCKKQ  120
TRDTERPLVG RYGDHGTDVH SGSIGGARTS EPSEETLKLW RNLERRVWLL NLNQQEPTSS  180
LSDMNERLRD SFESDLQTCK DSLQCAQEAH NTCMTVEGSQ VGPLYYYPEP LIEGGTQPSE  240
GYLSAVYDVN SHSELLEGSL SGHPRAAAEN SFLEQRIATD FSSIHQDRPS AENLEQVLAM  300
YEEPSACDDS SSHNRRPLVE SLQQSKRLKV VDASNELMGC QKPSTVSNVP WNLPNEEELP  360
RSYFSQERAM SDLLTWWEER DITAMMSRAA YQGRDILRDF EEFKQTLVAE NKEGSGIPPK  420
VHYIISDEQW QLVGHTMRDQ RRKIIWSCIS GSESEAKRQH IMENLEKIGS NIRLLRLDID  480
SLASQALKVY PKLQPFAKKP TFKSTEQFGY GENEDYQAGH KGGGLLLLQI MPISQVGQDF  540
NRRVRIPSRS MSELNAEREH KGGQTGHDWS SAICVYPDIC ESELVDQVLE HELEDAKALN  600
PSSQTADISA DYSEIEVRDF IYALDISFMD QDSSSHFGSE IAMGNEVDTA TRSPLSDTLP  660
AEESSEAESF EEDLLHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-262312130128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XPF50.0A0A2R6XPF5_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.21e-36MYB family protein