PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0007s0265.4.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 671aa    MW: 76115.4 Da    PI: 4.6914
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0007s0265.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.2e-152266348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          W++eEdell + v+ +G ++W+++a+ ++ g+t  qc+ rw+++l
  Mapoly0007s0265.4.p 22 VWSQEEDELLREQVRVYGIERWARVAEGLP-GKTSRQCRRRWNMFL 66
                         6*****************************.************986 PP
2Myb_DNA-binding28.63.2e-0972103134
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34 
                          rg WT eEd ll++ + ++G++ W+ Ia+ ++ g
  Mapoly0007s0265.4.p  72 RGGWTDEEDNLLLENHDRFGNR-WTEIAKNLP-G 103
                          789*******************.********9.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.9371170IPR017930Myb domain
SMARTSM007176.6E-131968IPR001005SANT/Myb domain
SuperFamilySSF466892.26E-2019103IPR009057Homeodomain-like
PfamPF002497.8E-132265IPR001005SANT/Myb domain
CDDcd001671.88E-132366No hitNo description
Gene3DG3DSA:1.10.10.606.7E-192377IPR009057Homeodomain-like
SMARTSM007171.6E-571117IPR001005SANT/Myb domain
PROSITE profilePS5129411.74971119IPR017930Myb domain
PfamPF002494.4E-872103IPR001005SANT/Myb domain
CDDcd001671.03E-575103No hitNo description
Gene3DG3DSA:1.10.10.603.0E-1078103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MKPSGARRFD NNEVRRGRPL VVWSQEEDEL LREQVRVYGI ERWARVAEGL PGKTSRQCRR  60
RWNMFLNVVS KRGGWTDEED NLLLENHDRF GNRWTEIAKN LPGSVLCKKQ TRDTERPLVG  120
RYGDHGTDVH SGSIGGARTS EPSEETLKLW RNLERRVWLL NLNQQEPTSS LSDMNERLRD  180
SFESDLQTCK DSLQCAQEAH NTCMTVEGSQ VGPLYYYPEP LIEGGTQPSE GYLSAVYDVN  240
SHSELLEGSL SGHPRAAAEN SFLEQRIATD FSSIHQDRPS AENLEQVLAM YEEPSACDDS  300
SSHNRRPLVE SLQQSKRLKV VDASNELMGC QKPSTVSNVP WNLPNEEELP RSYFSQERAM  360
SDLLTWWEER DITAMMSRAA YQGRDILRDF EEFKQTLVAE NKENSEGSGI PPKVHYIISD  420
EQWQLVGHTM RDQRRKIIWS CISGSESEAK RQHIMENLEK IGSNIRLLRL DIDSLASQAL  480
KVYPKLQPFA KKPTFKSTEQ FGYGENEDYQ AGHKGGGLLL LQIMPISQVG QDFNRRVRIP  540
SRSMSELNAE REHKGGQTGH DWSSAICVYP DICESELVDQ VLEHELEDAK ALNPSSQTAD  600
ISADYSEIEV RDFIYALDIS FMDQDSSSHF GSEIAMGNEV DTATRSPLSD TLPAEESSEA  660
ESFEEDLLHL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-192310330110MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XP750.0A0A2R6XP75_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.23e-27MYB family protein