PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0008s0006.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 244aa    MW: 28025.8 Da    PI: 8.45
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0008s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.4e-09206230126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykt+lC  ++  G+C+y + C+FaHg
  Mapoly0008s0006.1.p 206 YKTKLCTKYLS-GFCPYSNFCQFAHG 230
                          9**********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547912.5E-7115191IPR004088K Homology domain, type 1
SMARTSM003220.0033117188IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.5E-7117160IPR004088K Homology domain, type 1
PROSITE profilePS5008410.274118183IPR004088K Homology domain, type 1
CDDcd001056.60E-6120183No hitNo description
PfamPF000131.5E-5121154IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.7E-15200235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-8202235IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6205231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159205232IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-7206230IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MVRYIHGEGH GRYGEDSIYH FLELQLQRKA RRTSFQTSNV QEIFSGGLYN VNSAYNYTAD  60
YSIHESEEMY WRSLPPPFIF HPMFFANSEW TDLKSEHGVL YPLDYAASQL ATTKSREPYV  120
IKIPISSAFC GAIIGKKGSN AKLICQRTGL WNLTVQDQIF SGDFKYLAMG GSVDALCLAV  180
EFVRHLIIRE CLSGRPLDER YRHEKYKTKL CTKYLSGFCP YSNFCQFAHG TEEVRIQRTK  240
SHH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XM830.0A0A2R6XM83_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-16C3H family protein