PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0008s0031.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family SBP
Protein Properties Length: 1005aa    MW: 111668 Da    PI: 6.6313
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0008s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP102.24.2e-32135211177
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          +Cqv++C a+l+++k yh+rh+vC  +++a+ v+++++ +r+CqqC++fh + +fDe+krsCrr+L++hn+rrr+k+
  Mapoly0008s0031.1.p 135 RCQVQSCGAELTNLKGYHQRHRVCLRCAHATRVVLRNQPHRYCQQCGKFHPICDFDEGKRSCRRKLERHNNRRRRKA 211
                          6*************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.8E-25129197IPR004333Transcription factor, SBP-box
PROSITE profilePS5114127.812133210IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-29134213IPR004333Transcription factor, SBP-box
PfamPF031102.5E-24136210IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1005 aa     Download sequence    Send to blast
MAHGHETGLA WEWDSVLLLA NPSLTSHSLE GDGSTSCGLP GSSAADQNHE HDNHCHEHNH  60
EHNHDKFHAH ETSSADHVQT DSISSGSQQM GVNTDWRDPR LDCPNFLAGR VPCACTDNDD  120
DDSGVSRKRS KPVPRCQVQS CGAELTNLKG YHQRHRVCLR CAHATRVVLR NQPHRYCQQC  180
GKFHPICDFD EGKRSCRRKL ERHNNRRRRK ALESEDTLPP LDSGDIEPRS DSSPADDAMN  240
TTKPILFLEG EDKASSGGGV GFDSEMAQPS AVVTPNGKFI ASKEADEAVI ATVGTDVEMS  300
LQPLAPPVDK IVEEIFPTSE PSTKSPELVH SPEVQHVHKK DCLPHPEHVP ISRDSHLSNT  360
QTMSTNDMSS HHISPRDPQE AERLVRGHDE ESLLALLMED NSATEGSGLS QNGSVEVSEA  420
LLWDSSPPPI RPSKQATYSS PNPTGRISFK LYDWNPGDFP RQLRQQVMQW LSQMPVDLEG  480
YIRSGCTILT LFVSMPQPMW EKLNADWTES VLRLVRGQCG TFKFWNSGYL IARVGQQIVH  540
VENGKAVHPL CGRSDQGPML EGVYPSCLEA GVEQVVVISG SNLQQSESRL LVSFDGSYIK  600
NEVSSPGMDK EKADSSSLLQ ATFPALHSQK YGTAFIEVEH TTGISNFIPL LVAEKKIVDE  660
VRTLELEIDT ATTSCCSSQS HDSRFQPLNQ KRYHDLLVDL GWVLRNYTLN NFNPHHQSLG  720
QDVERLQGLL LFGVRRGWYT TVQRVLQVAK RSGVIERIGF LKNGMTALHV ALLHQQFAMM  780
DHLTSLMASL ACAGSCASNS WWDVDCPVSR GLTARQVLTL QAKRMHYGSA KPEGRKLFGK  840
SLAYEIRHVS QPNVNPDERR FSKGCNSKAD ICPKNLGYRL LSKESPDYHE VDVLCSTEEE  900
EARFFFPSVD HSRGKISTWN SLLRRDDVDT QVKSLVPYGR SRCSVEGLTM YISRASTRRP  960
VYASTVGVLL VCAGLCVMLQ HPNEVIELSL SLRRCLWGLQ NGPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A9e-32133226387squamosa promoter binding protein-like 7
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196208RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XMD10.0A0A2R6XMD1_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP48281320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-52squamosa promoter binding protein-like 7