PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0008s0060.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family LBD
Protein Properties Length: 252aa    MW: 26023.3 Da    PI: 7.5964
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0008s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.79.3e-3971081101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++apyf aeq +++fa+vhk+FGasnv kll ++p  +r da+ ++ yeA+ar++dPvyG+v++i++lqqq+++
  Mapoly0008s0060.1.p   7 PCGACKFLRRKCVRGCIFAPYFGAEQgAARFAAVHKIFGASNVGKLLLHIPLGKRCDAVLTISYEAQARLSDPVYGCVATIFALQQQVAS 96 
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkeel 101
                          l+aela ++++l
  Mapoly0008s0060.1.p  97 LQAELAIVQAQL 108
                          *******99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7346108IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-377105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSSSGAPCGA CKFLRRKCVR GCIFAPYFGA EQGAARFAAV HKIFGASNVG KLLLHIPLGK  60
RCDAVLTISY EAQARLSDPV YGCVATIFAL QQQVASLQAE LAIVQAQLAS RLAVAALQQQ  120
QQQHQQHGGG GAGGSSSMPY VEQGSMTPGG VTAGMSMAGS SSVGSYANRI KEESYHHGMH  180
CYDPGHHHGV HLDQMTSSPP DDMEPQDLHK RGSDSMDPQQ SGATGGGGGG GGGGDMGDLQ  240
ILAQALLSSR K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3641088111LOB family transfactor Ramosa2.1
5ly0_B1e-3641088111LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390481.12e-73uncharacterized protein LOC112289471
TrEMBLA0A2R6XMD70.0A0A2R6XMD7_MARPO; Uncharacterized protein
STRINGPP1S261_2V6.14e-74(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.19e-57LOB domain-containing protein 20