PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0008s0071.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family AP2
Protein Properties Length: 825aa    MW: 89171.1 Da    PI: 7.2516
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0008s0071.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.1e-15377436155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s ++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Mapoly0008s0071.1.p 377 SVFRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 436
                          689******************655454478446*************************98 PP
2AP246.96.7e-15479530155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  Mapoly0008s0071.1.p 479 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDIAAIKFRG 530
                          78****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-11377436IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-16377445IPR016177DNA-binding domain
CDDcd000188.97E-21377446No hitNo description
PROSITE profilePS5103219.045378444IPR001471AP2/ERF domain
SMARTSM003803.5E-28378450IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-15378444IPR001471AP2/ERF domain
PRINTSPR003672.5E-5379390IPR001471AP2/ERF domain
PfamPF008475.2E-10479530IPR001471AP2/ERF domain
CDDcd000181.21E-23479540No hitNo description
SuperFamilySSF541712.29E-17479540IPR016177DNA-binding domain
PROSITE profilePS5103218.979480538IPR001471AP2/ERF domain
SMARTSM003807.4E-32480544IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17480538IPR001471AP2/ERF domain
PRINTSPR003672.5E-5520540IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MRSVNNWLAF SLSPHLTIDV PDHAPSAQTN GPKMAQHSSA ENGLSYNGAP SGECYNLGQS  60
DGDTLSMRPD GSLCIMEALS RSHSGDWAQL KTSHVQHPSQ HLLNADLSRL AGSRAPSEQI  120
TQNQYDSLGS QSNKSDHDSG PKLEDFLGGA SSLGGQYTNR SDSQSHNFEN LYFRDINVNL  180
SPYSGGAQQQ ANHVPPSFHA YGLQRTDNSS TQQPYDSHSR NNTAAEPNLC HTNVHAQNLL  240
QAALDQHHHP GSAQAEMLQD CSLQSSNLSA LKTWLRQSQS ATGSGGVNAL GSADNKQQQQ  300
QQGLGKASCI PNIAGVHQSL SLSMSPGSQS SNTLVGAQPP NVTAETSPET RKRGAGRAGS  360
KEASPRKSID TFGQRTSVFR GVTRHRWTGR YEAHLWDNSC RKEGQTRKGR QVYLGGYDKE  420
EKAARAYDLA ALKYWGPNTT INFPIHQYEK ELEEMKNMTR QEYVASLRRK SSGFSRGASV  480
YRGVTRHHQH GRWQARIGRV AGNKDLYLGT YSTQEEAAEA YDIAAIKFRG INAVTNFDIS  540
RYDTKKICGT AHNTADGESP KVQAASTKEL AAVPPEQPSD PSVDGHQTDE DSQSLQTGNT  600
NTSQVTDGLV SKSHLQEWHM LYHQQQTQRN WDDANHQQQQ QQQAAAAQAQ QQQDVRTQSL  660
ISDSLGHKFL QSPAGNMHSA VLRNLMGLSD AGTSGSESSG GMLALPGPSS TMMGGSSGFP  720
GAQSPKSLRE QQQSEDESSK SGGQGGGGGS AYENFPQGDL SRHILYLSHG QSPPNGSAKS  780
TNNYDNSSLG NQSWMSPQGN LNQRVSAAGH LSVGHMPIFA VWND*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396532.10.0uncharacterized protein LOC112292371 isoform X2
TrEMBLA0A2R6XMH20.0A0A2R6XMH2_MARPO; Uncharacterized protein
STRINGPP1S131_139V6.11e-160(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-114AP2 family protein