PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0009s0166.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family LBD
Protein Properties Length: 126aa    MW: 13706.6 Da    PI: 7.4103
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0009s0166.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.81.2e-4013110198
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+ rrkC+++Cv+apyfpa+qp kfanvh++FGasnv+k+l++lpe+ r da++sl++eAear++dPvyG+ g i+  q ++ +l
  Mapoly0009s0166.1.p  13 SCAACKFTRRKCTAECVFAPYFPADQPLKFANVHRIFGASNVTKILQDLPESSRADAVTSLAFEAEARMKDPVYGCSGAISLTQTRILEL 102
                          6***************************************************************************************** PP

               DUF260  91 kaelallk 98 
                          +ae+++l 
  Mapoly0009s0166.1.p 103 QAEIQELV 110
                          ***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.87812113IPR004883Lateral organ boundaries, LOB
PfamPF031959.9E-4013108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MSHTSGASSS SSSCAACKFT RRKCTAECVF APYFPADQPL KFANVHRIFG ASNVTKILQD  60
LPESSRADAV TSLAFEAEAR MKDPVYGCSG AISLTQTRIL ELQAEIQELV DQVHHLEEKK  120
PMRLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-4491067104LOB family transfactor Ramosa2.1
5ly0_B6e-4491067104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528230.13e-47PREDICTED: LOB domain-containing protein 25
SwissprotQ8L8Q39e-47LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A2R6XLT59e-88A0A2R6XLT5_MARPO; Uncharacterized protein
STRINGXP_010528230.11e-46(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.13e-44LOB domain-containing protein 25
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]