PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0011s0011.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 707aa    MW: 77096.9 Da    PI: 6.7239
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0011s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.91.1e-12297375274
             trihelix   2 WtkqevlaLiearremeerlrrg.k.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                          W++ e  aL+ a+r+++ rl  + k       ++  +W+ev + +   g+ r+pk+ + kw+nl++ +k+i++++kk   +
  Mapoly0011s0011.1.p 297 WQDAEMDALVSAYRQIHMRLTVAgKkgkhvfkSANEKWKEVRNLLIPLGVDRQPKEIERKWSNLSTAFKQIADWNKKV--G 375
                          **************99999996421334455499******************************************95..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.2E-10297384No hitNo description
Gene3DG3DSA:3.40.50.6205.1E-76485702IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523746.29E-49488704No hitNo description
CDDcd092864.72E-100489701No hitNo description
PfamPF014671.2E-25492675IPR004821Cytidyltransferase-like domain
TIGRFAMsTIGR004822.7E-44493701IPR005248Probable nicotinate-nucleotide adenylyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009435Biological ProcessNAD biosynthetic process
GO:0009555Biological Processpollen development
GO:0009860Biological Processpollen tube growth
GO:0000309Molecular Functionnicotinamide-nucleotide adenylyltransferase activity
GO:0004515Molecular Functionnicotinate-nucleotide adenylyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MEPSANESHM DHSAYSPHPN PLTRNQVDHA HLPSPLSYTP FPRSDRQSYA TDGYPKEAFG  60
RESYNVRGGD GFVSGRESFG PDRVNYGGTG EAFARDRESL SKDADAFHAR GGGGGGDTRV  120
PYSRDPENCL SAAFAKDNDS LSNDDRSSKK VKRGGWWHES EGGERASEAS KDMESNRKDP  180
EGGAGGFVGS VGGIGAFRNV VGVISRVAGG GSVGSKMGGV ADNCGEVGGG LVVGGVVRGG  240
SADGDVGGDV GDGGGSCGGT GMDGEVGDDG DAEGRDGDSR DKGEKDCSGK KKRAELWQDA  300
EMDALVSAYR QIHMRLTVAG KKGKHVFKSA NEKWKEVRNL LIPLGVDRQP KEIERKWSNL  360
STAFKQIADW NKKVGRPSYW ELDEISKKEK TKAKELPATF RVQLYEAMAE FLGDRTAARR  420
SRGWTQYDGP DRAPLMMGAG NGVSVGSECS SGRGCDRGEF RRIVDIPLPM DKLSSQPSND  480
IMDQKRTRVV LLAPGSFNPP TYMHLRMFEL ARDALIGEGY DVLGGYMSPV NDAYGKKGLA  540
AAEHRIRLCQ LASNESPFIM VDSWEAKQTS YQRTLIVLNR VDHAVNTHGF AGDEKVRVMV  600
LCGADLLESF TDSKVWIPDQ VQSIFNEHGV VCISRDGKDV RKIIFENDML YEQRRNIIVV  660
DEIVTNNISS TKLRRNLERG LSVKYLTPDS VINYIKIHHL YDPNQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gzu_A6e-5748370114265NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1gzu_B6e-5748370114265NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1gzu_C6e-5748370114265NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358097.10.0uncharacterized protein LOC112273477 isoform X5
RefseqXP_024358098.10.0uncharacterized protein LOC112273477 isoform X5
TrEMBLA0A2R6XJK20.0A0A2R6XJK2_MARPO; Uncharacterized protein
STRINGPP1S241_77V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP347225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-05Trihelix family protein