PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0011s0037.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

LBD

Protein Properties

Length: 179aa MW: 19939 Da PI: 8.5998

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0011s0037.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	79.1	7.1e-25	13	111	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyG.avgvilklqqqleq 89 +C aC lrrkC+++Cv+apyfpa+++ k a+v++ F snv+k++++lpe+ r d ++sl++eAear++d + + i +lq ++++ Mapoly0011s0037.1.p 13 PCGACTSLRRKCTAECVFAPYFPADEALKVAYVQRNFEPSNVTKIMHDLPESSRADEVTSLAFEAEARMKDLAVSlTQRRIVELQGEIAE 102 7**********************************************************************6555156789999999999 PP DUF260 90 lkaelallk 98 l +++++ + Mapoly0011s0037.1.p 103 LMEQVKYFE 111 999888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.614	12	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-23	13	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MSHTGGGSSP SLPCGACTSL RRKCTAECVF APYFPADEAL KVAYVQRNFE PSNVTKIMHD 60 LPESSRADEV TSLAFEAEAR MKDLAVSLTQ RRIVELQGEI AELMEQVKYF EEKKRMRLTQ 120 GPSVTRVASR CLRVKRNPEF THEGTVIRVL LNRWVLLECT YLTLLVRGST GGAQLEKT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-25	13	109	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-25	13	109	11	114	LOB family transfactor Ramosa2.1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018453069.1	3e-28	PREDICTED: LOB domain-containing protein 25
Swissprot	Q8L8Q3	2e-27	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A176W1Z5	1e-129	A0A176W1Z5_MARPO; Uncharacterized protein
TrEMBL	A0A2R6XJP0	1e-129	A0A2R6XJP0_MARPO; Uncharacterized protein
STRING	Bra039072.1-P	2e-26	(Brassica rapa)
STRING	Bo9g008330.1	2e-26	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	8e-30	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Mapoly0011s0037.1.p

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]