PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0011s0057.2.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

Trihelix

Protein Properties

Length: 802aa MW: 87630 Da PI: 6.8672

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0011s0057.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.7	2.2e-11	553	629	2	71
trihelix 2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkr 71 W ev +L++a+++ +er++ ++ + +W++v k+++e ++ r + Ck+kwe + +yk ik++++k Mapoly0011s0057.2.p 553 WDTWEVILLVQAKKYEWERSECSSgkdrveTSGERWKKVEKFLKENKVvDRDGIACKNKWEAILSDYKSIKDWNRKP 629 9999*************9954323334499*******988877***********************984 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.8E-8	551	632	No hit	No description
PROSITE profile	PS50090	6.504	565	616	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence Send to blast
MKPGENVWDA IAADLAAVTA ATNGSDEIAD EDIRVEVQKV KIAELSHTSD SLELESGVNK 60 SHDCTGKIET NDLHADGISD SGLDCSSKPL LEGAHSGVKV GDELNVDSLL CQEEASEAKD 120 DYAQNVVETL TCSTEEDANN HSRHVADEEK KGKEDKGGNI LGKRNRKLNH RATRSSGKKL 180 KLQAPVNSDA GDISHRDKQD VTISSEGSLS KAQNLQKKPE WNEADGANIH SLPELEKLQR 240 VFTSLNTACG YLLKQQKIAS WENVKQAMKQ LSGADSETIS VDDVRRLSQL CPQIVVLSQF 300 SGEGEDISFQ IELFDPADGV KLNPPNSSNG STAVDAHDGG TSKSISAGKK IGDSEARVIV 360 ESRQKAFQMS LAQVAHQFQA PQSTSVSVGG DEHLKHPKLP HPAMLRHPTH EGRHSMVPAL 420 IGPPAQQLVL PRPPLLPQQL QHSYVNMSDA YPGLPFPLPF QPTNGYGPFG SFPQPQCNNY 480 AGYQLSNHPS SIPSSSQLSS MPMQSNVPHR SPSTTIIPLP IYADTPEAPS APEPSPYHGL 540 SLNKAKRRRS RNWDTWEVIL LVQAKKYEWE RSECSSGKDR VETSGERWKK VEKFLKENKV 600 VDRDGIACKN KWEAILSDYK SIKDWNRKPG NTVYSLLSPA EKKAANLPAV FVSSLLELMD 660 TFQGKACHIS PPSVLDPLGK TNPAVSGGDA SRAEEHSGEA HPSAHGNGTH GSAGRRKKPN 720 GGWSPLVAAF DRLSANMLNI EKGRDERSER LWALENRKYD LEKNKYELQA RKVDAEREDR 780 KGLVRVLGNL AGAFHRMADK M*

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence Send to blast

MKPGENVWDA IAADLAAVTA ATNGSDEIAD EDIRVEVQKV KIAELSHTSD SLELESGVNK  60
SHDCTGKIET NDLHADGISD SGLDCSSKPL LEGAHSGVKV GDELNVDSLL CQEEASEAKD  120
DYAQNVVETL TCSTEEDANN HSRHVADEEK KGKEDKGGNI LGKRNRKLNH RATRSSGKKL  180
KLQAPVNSDA GDISHRDKQD VTISSEGSLS KAQNLQKKPE WNEADGANIH SLPELEKLQR  240
VFTSLNTACG YLLKQQKIAS WENVKQAMKQ LSGADSETIS VDDVRRLSQL CPQIVVLSQF  300
SGEGEDISFQ IELFDPADGV KLNPPNSSNG STAVDAHDGG TSKSISAGKK IGDSEARVIV  360
ESRQKAFQMS LAQVAHQFQA PQSTSVSVGG DEHLKHPKLP HPAMLRHPTH EGRHSMVPAL  420
IGPPAQQLVL PRPPLLPQQL QHSYVNMSDA YPGLPFPLPF QPTNGYGPFG SFPQPQCNNY  480
AGYQLSNHPS SIPSSSQLSS MPMQSNVPHR SPSTTIIPLP IYADTPEAPS APEPSPYHGL  540
SLNKAKRRRS RNWDTWEVIL LVQAKKYEWE RSECSSGKDR VETSGERWKK VEKFLKENKV  600
VDRDGIACKN KWEAILSDYK SIKDWNRKPG NTVYSLLSPA EKKAANLPAV FVSSLLELMD  660
TFQGKACHIS PPSVLDPLGK TNPAVSGGDA SRAEEHSGEA HPSAHGNGTH GSAGRRKKPN  720
GGWSPLVAAF DRLSANMLNI EKGRDERSER LWALENRKYD LEKNKYELQA RKVDAEREDR  780
KGLVRVLGNL AGAFHRMADK M*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6XJR8	0.0	A0A2R6XJR8_MARPO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	5e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Mapoly0011s0057.2.p