PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0014s0060.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

WOX

Protein Properties

Length: 327aa MW: 35182.1 Da PI: 6.6097

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0014s0060.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.5	3e-20	116	176	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t++++ql++Le+lF + n +p++++++e++ +l ++ e++V++WFqNr+a+ k+ Mapoly0014s0060.1.p 116 RQRWTPSQSQLQILEKLFDQgNGTPNKQRIKEITIELsqhgQIAETNVYNWFQNRKARAKR 176 89***************99************************************97 PP
2	Wus_type_Homeobox	98	7.4e-32	115	178	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP+++Q++iLe+l+++G tPnk++i++it eL+++G+i ++NV++WFQNrkaR ++kq Mapoly0014s0060.1.p 115 ARQRWTPSQSQLQILEKLFDQGNGTPNKQRIKEITIELSQHGQIAETNVYNWFQNRKARAKRKQ 178 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-17	107	180	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-15	110	180	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.463	112	177	IPR001356	Homeobox domain
SMART	SM00389	3.1E-12	114	181	IPR001356	Homeobox domain
Pfam	PF00046	6.8E-18	116	176	IPR001356	Homeobox domain
CDD	cd00086	1.03E-12	116	178	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEADARVGGK VEMAPLQQQV QVQSVGGGAA LVLTPSMDNN LPQPLYMLGS GQVMTDEQLE 60 TLRRQISVYS TICQQLVEMH KASVSAQSSL AGIVVGQHPL SYDPLIGTPN HKTTARQRWT 120 PSQSQLQILE KLFDQGNGTP NKQRIKEITI ELSQHGQIAE TNVYNWFQNR KARAKRKQQL 180 VTPTNGESED TDVDSPKEKK PKVDKDSGQE NSNSGGRADT TSDGGGFEQK PTIIDHYESA 240 SSRAAGGYAQ GGSQLSSLHN VMGDGVVDIV RTEESGRTLQ PLHTGERYRL STSLVEGVGG 300 AAPMAPEGHT IQHLSNGLAN GTMLRS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024395861.1	1e-102	WUSCHEL-related homeobox 8-like isoform X2
Refseq	XP_024395862.1	1e-102	WUSCHEL-related homeobox 8-like isoform X2
Refseq	XP_024395863.1	1e-102	WUSCHEL-related homeobox 8-like isoform X2
TrEMBL	A0A2R6XHF9	0.0	A0A2R6XHF9_MARPO; Uncharacterized protein
STRING	PP1S224_106V6.1	1e-101	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1873	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	9e-55	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Mapoly0014s0060.1.p