PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0014s0060.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family WOX
Protein Properties Length: 324aa    MW: 34989.9 Da    PI: 6.5165
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0014s0060.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53e-20116176257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          r+R+t++++ql++Le+lF + n +p++++++e++ +l    ++ e++V++WFqNr+a+ k+
  Mapoly0014s0060.2.p 116 RQRWTPSQSQLQILEKLFDQgNGTPNKQRIKEITIELsqhgQIAETNVYNWFQNRKARAKR 176
                          89*****************99**************************************97 PP
2Wus_type_Homeobox987.2e-32115178265
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          ar+RWtP+++Q++iLe+l+++G  tPnk++i++it eL+++G+i ++NV++WFQNrkaR ++kq
  Mapoly0014s0060.2.p 115 ARQRWTPSQSQLQILEKLFDQGNGTPNKQRIKEITIELSQHGQIAETNVYNWFQNRKARAKRKQ 178
                          789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-17107180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-15110180IPR009057Homeodomain-like
PROSITE profilePS5007114.463112177IPR001356Homeobox domain
SMARTSM003893.1E-12114181IPR001356Homeobox domain
PfamPF000466.7E-18116176IPR001356Homeobox domain
CDDcd000861.07E-12116178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEADARVGGK VEMAPLQQQV QVQSVGGGAA LVLTPSMDNN LPQPLYMLGS GQVMTDEQLE  60
TLRRQISVYS TICQQLVEMH KASVSAQSSL AGIVVGQHPL SYDPLIGTPN HKTTARQRWT  120
PSQSQLQILE KLFDQGNGTP NKQRIKEITI ELSQHGQIAE TNVYNWFQNR KARAKRKQQL  180
VTPTNGESED TDVDSPKEKK PKVDKDSGQE NSNSGGRADT TSDGGGFEQK PTIIDHYESA  240
SSRAAGGYAQ GGSQLSSLHN VMGDGVVDIV RTEESGRTLQ PLHTGERYRL STSLVEGVGG  300
AAPMAPEGHT IQHLSNDSHL PMK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395861.11e-102WUSCHEL-related homeobox 8-like isoform X2
RefseqXP_024395862.11e-102WUSCHEL-related homeobox 8-like isoform X2
RefseqXP_024395863.11e-102WUSCHEL-related homeobox 8-like isoform X2
TrEMBLA0A2R6XHF80.0A0A2R6XHF8_MARPO; Uncharacterized protein
STRINGPP1S224_106V6.11e-101(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.18e-55WUSCHEL related homeobox 13