PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0019s0045.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family ARF
Protein Properties Length: 926aa    MW: 102118 Da    PI: 6.8463
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0019s0045.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.21.7e-24134238199
                          EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                          f+k+lt sd++++g +++p++ ae+               +  ++l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+a++L++gD+v
  Mapoly0019s0045.2.p 134 FCKTLTASDTSTHGGFSIPRRAAEKVfppldysqqpP--AHPAQELVARDLHDQEWHFRHIYRGQPRRHLLTTGWSVFVSAKRLQAGDSV 221
                          99****************************9987442..334468********************************************* PP

                          EEEE-SSSEE..EEEEE-S CS
                   B3  81 vFkldgrsefelvvkvfrk 99 
                          +F   ++++++l+++++r+
  Mapoly0019s0045.2.p 222 LFI--RDDKGQLLLGIRRA 238
                          ***..5588999****997 PP
2Auxin_resp116.42.4e-38263346183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a haa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+s  rr++Gt++g+ d+dp+rWp S+WrsLk
  Mapoly0019s0045.2.p 263 ANHAAATNSRFTIFYNPRASPSEFVIPLAKYNKAIYhTQVSVGMRFRMVFETEESGVRRYMGTITGIGDVDPLRWPSSHWRSLK 346
                          679********************************9889*******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-45122266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-41126250IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-22133237No hitNo description
PROSITE profilePS5086312.717134239IPR003340B3 DNA binding domain
PfamPF023621.9E-22134238IPR003340B3 DNA binding domain
SMARTSM010199.3E-25134239IPR003340B3 DNA binding domain
PfamPF065075.1E-34263346IPR010525Auxin response factor
PROSITE profilePS5174524.483791875IPR000270PB1 domain
SuperFamilySSF542772.26E-7808870No hitNo description
PfamPF023091.2E-7835879IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MYSCSPMRLS ASGYAQHQTM TGEQRSLNSE LWHACAGPLV SVPPVGSRVV YFPQGHSEQV  60
AASTQKEADV HIPSYPSLPS RLICLLDNVT LHADMETDEV YTRMTLLPMS GSPEKELVIV  120
PDITRDTKQP TDFFCKTLTA SDTSTHGGFS IPRRAAEKVF PPLDYSQQPP AHPAQELVAR  180
DLHDQEWHFR HIYRGQPRRH LLTTGWSVFV SAKRLQAGDS VLFIRDDKGQ LLLGIRRANR  240
QQTAMPSSVL TSDSMHIGVL AAANHAAATN SRFTIFYNPR ASPSEFVIPL AKYNKAIYHT  300
QVSVGMRFRM VFETEESGVR RYMGTITGIG DVDPLRWPSS HWRSLKVGWD ESTAGERQRR  360
VSLWEIEPLT TPFLICPPLT LRAKRPRASS RGHSGEDEEG DGSVKKSSMW LRDDERDGLS  420
NLPFRGLGMD PWTPRLPQSP DSVAPGTPTD FYRVMAAAAL QEIRGNETSK QLLQRQPQQS  480
LQNHQMQFRP QQQQPPLQQQ EQQQQQQQQQ QQQQQLNMQQ QQQQVLQSPQ PLPLPDVTGP  540
LLQLSSSRPQ SPMQLSTLRA SSGYTDSDVH LSPASTASGS FPLQSLLSRT QQGSVLTTED  600
TNQFSNLLRS NQSAMQQATM LPGSAMVGRD SPVSSAWYSM RDSTTSDCAH PSSRMGRADS  660
SPSSAPTYAL SSNEPCQSGL TALPMQNPTY AVFRDNSQEQ DQVQSDPRSH LLFGVSIDQM  720
PNGAGGLGSR GFGKAKDNQA RFAGGSLLPA PYCSSAGQDL PISPGIISHG SINDSQFMQR  780
GFMAPVSSPQ RSYTKVYKLG SVGRSLDVAQ FTNYTDLRVH LARMFGLEGQ LEDPQRSGWQ  840
LVFVDNEQDV LLVGDDPWDE FVNCVRSIRI LSPSEVMHMS QEGLELLNIV PPTAPRPTSS  900
GSEDGATMPA GFEKSCGNDA QRGCP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1632736751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP8779690.0KP877969.1 Marchantia polymorpha auxin response factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385807.10.0auxin response factor 6-like isoform X2
SwissprotQ9ZTX80.0ARFF_ARATH; Auxin response factor 6
TrEMBLA0A2R6XES50.0A0A2R6XES5_MARPO; Auxin response factor
STRINGPP1S163_119V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Oh E, et al.
    Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl.
    Elife, 2015.
    [PMID:24867218]
  3. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  4. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  5. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  6. Flores-Sandoval E,Eklund DM,Bowman JL
    A Simple Auxin Transcriptional Response System Regulates Multiple Morphogenetic Processes in the Liverwort Marchantia polymorpha.
    PLoS Genet., 2015. 11(5): p. e1005207
    [PMID:26020649]
  7. Eklund DM, et al.
    Auxin Produced by the Indole-3-Pyruvic Acid Pathway Regulates Development and Gemmae Dormancy in the Liverwort Marchantia polymorpha.
    Plant Cell, 2015. 27(6): p. 1650-69
    [PMID:26036256]
  8. Batista VG,Pinheiro MP,Melo Filho PA,Santos RC,Lima LM
    Temporal and tissue expression of genes involved in buds of earliness cotton cultivar.
    Genet. Mol. Res., 2015. 14(3): p. 7386-94
    [PMID:26214417]
  9. Li P, et al.
    Ca(2+) -regulated and diurnal rhythm-regulated Na(+) /Ca(2+) exchanger AtNCL affects flowering time and auxin signalling in Arabidopsis.
    Plant Cell Environ., 2016. 39(2): p. 377-92
    [PMID:26296956]
  10. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  11. Luo S, et al.
    Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 1156
    [PMID:26734051]
  12. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  13. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  14. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]