PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0019s0071.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 402aa    MW: 45134.8 Da    PI: 6.4283
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0019s0071.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.2e-141358146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         +g+W +eEde+lv++v+q+G ++W++I ++  + Rt+k+c++rw +
  Mapoly0019s0071.2.p 13 KGPWMPEEDEILVEYVRQFGARDWSSIRSKGLLPRTGKSCRLRWVN 58
                         79*************************8876677**********87 PP
2Myb_DNA-binding482.9e-1569109345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          ++++eE++l v+  ++lG++ W++Ia++++ gRt++++k++w 
  Mapoly0019s0071.2.p  69 KFSPEEEKLVVEMQAKLGNK-WAKIASCLP-GRTDNDVKNFWS 109
                          79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.417864IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-19961IPR009057Homeodomain-like
SuperFamilySSF466892.66E-2712108IPR009057Homeodomain-like
SMARTSM007171.4E-111262IPR001005SANT/Myb domain
PfamPF002498.7E-121358IPR001005SANT/Myb domain
CDDcd001675.59E-121560No hitNo description
Gene3DG3DSA:1.10.10.602.5E-1862114IPR009057Homeodomain-like
PROSITE profilePS5129416.54165116IPR017930Myb domain
SMARTSM007171.6E-1366114IPR001005SANT/Myb domain
PfamPF002491.6E-1369109IPR001005SANT/Myb domain
CDDcd001679.05E-1269108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MKTIQNGDEV LRKGPWMPEE DEILVEYVRQ FGARDWSSIR SKGLLPRTGK SCRLRWVNKL  60
KPDLKSGCKF SPEEEKLVVE MQAKLGNKWA KIASCLPGRT DNDVKNFWST RQKRILRALQ  120
RPKMPSGSTD AAADTSDLRK DPSITDYGAF QVHSPSGTGL VPSGFVTPFM FEDDNAFREP  180
PGHLRLRHSV QPFNSLEVDD VLSLKLQDMV AGDSHFTDSD FSQCGRVLDD PRHGSVMYQH  240
SPRMMITPRN ARSVKRRPRS RRDARSCFEH HSGTDGGQDS VQMLPEIGLP LIQGNSRDFG  300
VPLSTEQQNN NYLDFLLQTE ASSMHSSQMF SPELPSFLTN SQQWEKLPML YSNDPSIQEP  360
DVKDSDSCSP DSVISGFAAD VFDSLEPLCP AAPEWWVARL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-26111145106B-MYB
1h8a_C8e-261111425126MYB TRANSFORMING PROTEIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255262RRPRSRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382208.11e-151myb protein-like
TrEMBLA0A2R6XEW60.0A0A2R6XEW6_MARPO; Uncharacterized protein
STRINGPP1S114_136V6.11e-145(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.15e-55MYB family protein