PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0019s0134.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

SBP

Protein Properties

Length: 1159aa MW: 126475 Da PI: 7.4367

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0019s0134.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.2	1.3e-39	209	286	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvCe+h+ka ++ v+ l+qrfCqqCsrfh l+ fDe+krsCrrrLa+hn+rrrk+q+ Mapoly0019s0134.1.p 209 MCQVDDCKADLSHAKDYHRRHKVCEMHAKAGKASVTRLMQRFCQQCSRFHPLTAFDEGKRSCRRRLAGHNSRRRKNQP 286 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.4E-32	203	271	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.154	207	284	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.62E-36	208	288	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.1E-29	210	283	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.87E-5	863	996	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	9.5E-5	906	1027	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1159 aa Download sequence Send to blast
MDSEGGSQVA LDTYTRSSPP FLPHQFFPGA RVRETVNGGR QGSLDHGAYN HQYNGARMAD 60 WDVKSWDWDH VLFLAQPNPQ AAQPIELQRT YQTDDNGSRR KFHAPSRDGV VLRLDGTSTS 120 PDHNGSSDHD DPYVSDRRRK HHLGYQDNGY GNSDKAQPFL RDGSSPEEDA ESLSLKLGGH 180 SYAYSDDAGN GPRGTKRFRS SSPGPQFPMC QVDDCKADLS HAKDYHRRHK VCEMHAKAGK 240 ASVTRLMQRF CQQCSRFHPL TAFDEGKRSC RRRLAGHNSR RRKNQPDPTA ARGYGNGEEN 300 GAGNVAGLVG ILNILTQLQA VSSVGAIQGA VSEREALVRQ YLKKGITPAG LEGASLANLF 360 KVNGVSAENG RPDLKPQSST NDATHNGSAE PADAWFSALA SAAAAPATTE TLSFLLQSQL 420 ASALLKAAEV PHASGILENS VHRGEHQQTD LQSGKVSPSA VPQKLFPVTQ ASEYRGSGNG 480 KLDVNRDDDG ATESTSDGEA PASMMTFMEG QESRNLQEVV SHPSRPCIDL QLPPPQNLSE 540 SSPSGSDNSP SSSSHDWQGR TGRITFKLFD KDPGELPQSL RKEILEWLAH RPSDMESHIR 600 PGCVVLTIFL SMPSLAWGEL ESNMRASLQR LTSCGTFWCN GRIHVQVERQ NALIVDGRVH 660 INKPKGSRLP QILSVRPLAV VAGQSTKIFI RGSNLKRPGT GIFCPYQGKY MAEGVQWADG 720 QQARETVPPG RAESEEAGTG EDALEFTFSG GLPGIVSRCF IEVERQAGGG DAVPVIVADN 780 PVCSEIRSLE QEIENQGLIA ANQAKLSGCE PEEVFHQIRV ARAMAELEVK NVLNELGWLF 840 LNSQTIHPLV DLPLLVPSRQ KRLLVYAVER DWCAVVKQIL DIIFALGLSL ETGGQTLNGL 900 VEIFDDETSL LHRAVKKKCR PMVELLLAYV PYSGVDDGDV RVQQVLSRLS RHGSQYRCIF 960 TPDVAGPEGF TPLHVAASME GAEGIIDALT SDPNYIGLHT WSHVQNSMGE TPFACALAGK 1020 KASYMQLVRS KLARRDGQVT INMPINMPIS VSSIFGHPST SAANNPQYSL ELPVWSNRAF 1080 PQVEMPVAAR LVHPRRCSHV PASMRHRASR ASLYRPFMVS MVAVAALCVC VCVVMRGPVT 1140 IRFILPPFSW NSVKFGFQ*

Sequence ? help Back to Top

Protein Sequence Length: 1159 aa Download sequence Send to blast

MDSEGGSQVA LDTYTRSSPP FLPHQFFPGA RVRETVNGGR QGSLDHGAYN HQYNGARMAD  60
WDVKSWDWDH VLFLAQPNPQ AAQPIELQRT YQTDDNGSRR KFHAPSRDGV VLRLDGTSTS  120
PDHNGSSDHD DPYVSDRRRK HHLGYQDNGY GNSDKAQPFL RDGSSPEEDA ESLSLKLGGH  180
SYAYSDDAGN GPRGTKRFRS SSPGPQFPMC QVDDCKADLS HAKDYHRRHK VCEMHAKAGK  240
ASVTRLMQRF CQQCSRFHPL TAFDEGKRSC RRRLAGHNSR RRKNQPDPTA ARGYGNGEEN  300
GAGNVAGLVG ILNILTQLQA VSSVGAIQGA VSEREALVRQ YLKKGITPAG LEGASLANLF  360
KVNGVSAENG RPDLKPQSST NDATHNGSAE PADAWFSALA SAAAAPATTE TLSFLLQSQL  420
ASALLKAAEV PHASGILENS VHRGEHQQTD LQSGKVSPSA VPQKLFPVTQ ASEYRGSGNG  480
KLDVNRDDDG ATESTSDGEA PASMMTFMEG QESRNLQEVV SHPSRPCIDL QLPPPQNLSE  540
SSPSGSDNSP SSSSHDWQGR TGRITFKLFD KDPGELPQSL RKEILEWLAH RPSDMESHIR  600
PGCVVLTIFL SMPSLAWGEL ESNMRASLQR LTSCGTFWCN GRIHVQVERQ NALIVDGRVH  660
INKPKGSRLP QILSVRPLAV VAGQSTKIFI RGSNLKRPGT GIFCPYQGKY MAEGVQWADG  720
QQARETVPPG RAESEEAGTG EDALEFTFSG GLPGIVSRCF IEVERQAGGG DAVPVIVADN  780
PVCSEIRSLE QEIENQGLIA ANQAKLSGCE PEEVFHQIRV ARAMAELEVK NVLNELGWLF  840
LNSQTIHPLV DLPLLVPSRQ KRLLVYAVER DWCAVVKQIL DIIFALGLSL ETGGQTLNGL  900
VEIFDDETSL LHRAVKKKCR PMVELLLAYV PYSGVDDGDV RVQQVLSRLS RHGSQYRCIF  960
TPDVAGPEGF TPLHVAASME GAEGIIDALT SDPNYIGLHT WSHVQNSMGE TPFACALAGK  1020
KASYMQLVRS KLARRDGQVT INMPINMPIS VSSIFGHPST SAANNPQYSL ELPVWSNRAF  1080
PQVEMPVAAR LVHPRRCSHV PASMRHRASR ASLYRPFMVS MVAVAALCVC VCVVMRGPVT  1140
IRFILPPFSW NSVKFGFQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	201	283	2	84	squamosa promoter binding protein-like 4

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6XF33	0.0	A0A2R6XF33_MARPO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2595	14	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	1e-82	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	Mapoly0019s0134.1.p