PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0023s0030.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 533aa    MW: 56068.8 Da    PI: 7.2585
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0023s0030.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.23.7e-1087112227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++ C +++rtG C +G +C+F+H+p
  Mapoly0023s0030.2.p  87 GEPDCTYYMRTGLCGFGMSCRFNHPP 112
                          6899********************97 PP
2zf-CCCH37.73.4e-12132157227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++++tGtCk+G++Ck++H++
  Mapoly0023s0030.2.p 132 GQPECQYYLKTGTCKFGATCKYHHPR 157
                          5799********************96 PP
3zf-CCCH34.43.8e-11178203227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C +++rtG Cky  +CkF+H++
  Mapoly0023s0030.2.p 178 GEKECAYYMRTGSCKYNVTCKFHHPQ 203
                          7899********************97 PP
4zf-CCCH36.67.8e-12346372127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+++++tG Ck+G +Ck++H++
  Mapoly0023s0030.2.p 346 PGQPECQYYMKTGDCKFGITCKYHHPK 372
                          5789*********************96 PP
5zf-CCCH31.92.2e-10395417426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           +C f+ r+G+Ck+G++CkF H+
  Mapoly0023s0030.2.p 395 QPCTFYTRYGICKFGPTCKFDHP 417
                          69********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.1E-585112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.26385113IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-787112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-590113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-491111IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-6130157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356130158IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9133157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6134159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4136157IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4176203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404176204IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-9178203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6179204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4182202IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5345372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68345373IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-9347372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5349374IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6391418IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784391419IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5394419IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-8395417IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MEYYAGQGAP SSFAGLEGTV SDPNTGAVLS SLSRSEDWHL RHGAPSPAST AAETGLEEAV  60
WQQMTGMTLQ PQEGMEAPQG PYPERSGEPD CTYYMRTGLC GFGMSCRFNH PPNRKLAAAV  120
ARNKGEYPER LGQPECQYYL KTGTCKFGAT CKYHHPRDKA GSTGRVQLNI LGLPLRPGEK  180
ECAYYMRTGS CKYNVTCKFH HPQPATVGVV PMSGSSIYAA PGPSSPAPQP YQGLPTWPIA  240
RTPYMPSPRI QGPSNYGAMI LPAQGLVGLP AGWSTYQGPV GPMASPEGQQ HPIGTGFVYT  300
QQSDPVSGGV HGTFPQFMPA TTAMGLPALQ PQQSLGSQKD NFPERPGQPE CQYYMKTGDC  360
KFGITCKYHH PKDRATPSPT CGLSPIGLPL RPGAQPCTFY TRYGICKFGP TCKFDHPLGG  420
LPYSPSASSL TDMPVAPYPI GSSPTTLAPS SSSSETPQEA PPQPFVSSSS NEPAAVAEEP  480
PGHNQSREGA NDAPQSSGTT GPILAQAGQS LSMSGSSPGT GSANPADILG AS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373414.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373415.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373416.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF91e-145ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A176VZ110.0A0A176VZ11_MARPO; Uncharacterized protein
STRINGPP1S102_155V6.11e-169(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-123zinc finger protein 1