PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0025s0044.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 529aa    MW: 56152.3 Da    PI: 7.2291
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0025s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09114163154
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r++ +  rE+ RRdr+N+ f+eL  +l ++     +K++Ka+iL   v+ +k+L
  Mapoly0025s0044.1.p 114 RKVHKADREKLRRDRLNEQFAELAGVLDPD----RPKNDKATILGDSVQVVKEL 163
                          5677889*******************9997....79*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-11113176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.874113163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.59E-8114168No hitNo description
Gene3DG3DSA:4.10.280.101.5E-11114185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-7114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-7119169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MAASSTNSWL HTSLLSPSSQ QQSAQHALYA TDLPMHHPSS HLAQQHHVGL GQQDHHQEHL  60
PCDTFCQPLH HSLNPDFQHS AESHQLNGFN GGVGGSCSGR VGVGGENGGH VSARKVHKAD  120
REKLRRDRLN EQFAELAGVL DPDRPKNDKA TILGDSVQVV KELRAEVKRL RTEHTSLLDE  180
SRDLAQEKTE LREEKASLKN ETEQLQGQLQ QRLRIMLPWM GMDPSLMMGA APYAYPMAVP  240
QPGPPSSEGT QTSTAPPVPQ SVVAPAAYIP MAPTAPGTFA VHPALQAYTM FGNRPGEGGA  300
PYMPYPHYPP QVNSHSHVER PYAQYPSPVQ PLPGYLMQMQ PHQGQPPISG APPGPSMYRS  360
YGPGMPLMPP QPQANQQNVQ ARASQHPVAP YAHYPASGMQ PYSGPSLSSS PQASPGQSVQ  420
TTLQLQTPSQ PQPQKPFEAS PVNSTDGSSK AQSGGSGSAS SGHKKEPKQA AASGVSDSIA  480
SSPISSAPAA SVSSTGNGGD AGHLDTGACP NRDTSQTHDT SFGRPLVK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381252.19e-93pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381254.19e-93pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381255.19e-93pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381256.19e-93pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381257.19e-93pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381258.19e-93pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381259.19e-93pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381260.19e-93pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381262.19e-93pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381263.19e-93pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381264.19e-93pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBLA0A2R6XB510.0A0A2R6XB51_MARPO; Uncharacterized protein
STRINGPP1S136_27V6.14e-91(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP34011425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-36bHLH family protein