PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0025s0044.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 445aa    MW: 47099.6 Da    PI: 8.2243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0025s0044.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-093079154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         r++ +  rE+ RRdr+N+ f+eL  +l ++     +K++Ka+iL   v+ +k+L
  Mapoly0025s0044.2.p 30 RKVHKADREKLRRDRLNEQFAELAGVLDPD----RPKNDKATILGDSVQVVKEL 79
                         5677889*******************9997....79*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.8742979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-112992IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-73079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-83084No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1130101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-73585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MENLLSIPLY PNCSGRVGVG GENGGHVSAR KVHKADREKL RRDRLNEQFA ELAGVLDPDR  60
PKNDKATILG DSVQVVKELR AEVKRLRTEH TSLLDESRDL AQEKTELREE KASLKNETEQ  120
LQGQLQQRLR IMLPWMGMDP SLMMGAAPYA YPMAVPQPGP PSSEGTQTST APPVPQSVVA  180
PAAYIPMAPT APGTFAVHPA LQAYTMFGNR PGEGGAPYMP YPHYPPQVNS HSHVERPYAQ  240
YPSPVQPLPG YLMQMQPHQG QPPISGAPPG PSMYRSYGPG MPLMPPQPQA NQQNVQARAS  300
QHPVAPYAHY PASGMQPYSG PSLSSSPQAS PGQSVQTTLQ LQTPSQPQPQ KPFEASPVNS  360
TDGSSKAQSG GSGSASSGHK KEPKQAAASG VSDSIASSPI SSAPAASVSS TGNGGDAGHL  420
DTGACPNRDT SQTHDTSFGR PLVK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381252.11e-82pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381254.11e-82pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381255.11e-82pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381256.11e-82pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381257.11e-82pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381258.11e-82pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381259.11e-82pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381260.11e-82pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381262.11e-82pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381263.11e-82pollen-specific leucine-rich repeat extensin-like protein 1
RefseqXP_024381264.11e-82pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBLA0A2R6XB550.0A0A2R6XB55_MARPO; Uncharacterized protein
STRINGPP1S136_27V6.16e-81(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.15e-37bHLH family protein