PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0027s0033.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family DBB
Protein Properties Length: 238aa    MW: 26224.2 Da    PI: 6.5389
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0027s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.5e-07434536
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                          C+ +e  +++lfC  ++  lC +C ++ H g
  Mapoly0027s0033.1.p  4 LCDVCEAAPARLFCAADEAALCLTCDEKVH-G 34
                         7***************************99.5 PP
2zf-B_box24.17.7e-085392338
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                          ++C+ +e+ ++ +fC  +++ lC +C +  H g    H+
  Mapoly0027s0033.1.p 53 VPRCDICENAPAFFFCGIDGTSLCLQCDMDVHIGgkktHE 92
                         589**************************99944555675 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.665147IPR000315B-box-type zinc finger
SMARTSM003369.9E-10147IPR000315B-box-type zinc finger
PfamPF006431.1E-5342IPR000315B-box-type zinc finger
CDDcd000212.93E-7345No hitNo description
SMARTSM003364.3E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501198.6465196IPR000315B-box-type zinc finger
PfamPF006431.7E-65392IPR000315B-box-type zinc finger
CDDcd000214.90E-75493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MRTLCDVCEA APARLFCAAD EAALCLTCDE KVHGCNKLAS RHVRLELAEA RAVPRCDICE  60
NAPAFFFCGI DGTSLCLQCD MDVHIGGKKT HERYLLMGQR VELPTKPRQD DLAAVKDGAT  120
KDGKKSKDGN EHIHHHHHHH HHHHHHHEGQ QDKTKPVTSG EWNNSNAPAV AIAVGDEDLQ  180
SPTNRRVSRM IDLNTRPAHL QQLAHTSKDQ ELASSDDECV GVVPEMAPRS SSENSEE*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024517934.12e-87B-box zinc finger protein 18 isoform X3
RefseqXP_024540627.12e-87B-box zinc finger protein 18 isoform X3
SwissprotQ9SJU57e-52BBX18_ARATH; B-box zinc finger protein 18
TrEMBLA0A176WPN71e-175A0A176WPN7_MARPO; Uncharacterized protein
TrEMBLA0A2R6X9X21e-175A0A2R6X9X2_MARPO; Uncharacterized protein
STRINGPP1S207_121V6.13e-76(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21320.16e-54DBB family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]