PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0029s0015.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

HB-other

Protein Properties

Length: 273aa MW: 30109.8 Da PI: 7.3215

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0029s0015.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.4e-19	20	74	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +R++ ++ q+e Le+l+++n+yps+e r++L+++lgL+e+q ++WF rR k++k Mapoly0029s0015.1.p 20 SRRKKSAAQIEYLERLYAENKYPSEEVRAKLSAQLGLSEKQMQIWFTHRRHKDRK 74 69999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-18	6	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.74E-17	8	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.362	15	75	IPR001356	Homeobox domain
SMART	SM00389	2.6E-17	17	79	IPR001356	Homeobox domain
Pfam	PF00046	7.4E-17	20	74	IPR001356	Homeobox domain
CDD	cd00086	4.65E-18	21	74	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MEVLSMDEDG GSPVQRKTTS RRKKSAAQIE YLERLYAENK YPSEEVRAKL SAQLGLSEKQ 60 MQIWFTHRRH KDRKDGVEDV KLTFYAMRHK GGEAHLDFME ELNSGKRMGG SFNGREDMVP 120 SNGFQPQSFH GGEISNGHYI VDKRMERTER TDSESDNSEL GEAEDLVGNG YLPPMKRGSM 180 VNRKDRGVYK RPLPVPPRGK PGAHELENAA IAAVEAQLGG AIRVDGPLLG MEFDSLPPDA 240 WSHLGNGTVP IPVQGVQGRG VGSGRMLTVG TY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	74	RRHKDRKD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A176WKA2	0.0	A0A176WKA2_MARPO; Uncharacterized protein
TrEMBL	A0A2R6X8P4	0.0	A0A2R6X8P4_MARPO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8823	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	1e-24	homeobox-1

Link Out ? help Back to Top
Phytozome	Mapoly0029s0015.1.p