PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0029s0049.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

NF-YC

Protein Properties

Length: 232aa MW: 26379.3 Da PI: 6.2765

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0029s0049.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	174.2	1.4e-54	67	171	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql+ fw++q +e+ ++fknh+lPlarikki+k+dedvkmi+aeaPvl++kace+fileltlrsw+h+eenkrrtl+++dia a+tr d Mapoly0029s0049.1.p 67 QLQLFWQQQiqeMEQINEFKNHQLPLARIKKIMKSDEDVKMIAAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRGD 156 89***999899************************************************************************* PP NF-YC 88 ifdflvdivprdelk 102 ifdflvdivprdelk Mapoly0029s0049.1.p 157 IFDFLVDIVPRDELK 171 **********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.35E-32	55	161	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	8.6E-37	81	153	IPR009072	Histone-fold
Pfam	PF00808	2.2E-21	89	152	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MASHPHHLQH PSSSPGMPHP QAVMQPPMHY PQGQPQILMD GGYGMVSSQL QGQMQPQLHY 60 QQIQKQQLQL FWQQQIQEME QINEFKNHQL PLARIKKIMK SDEDVKMIAA EAPVLFAKAC 120 EMFILELTLR SWIHTEENKR RTLQRNDIAG AITRGDIFDF LVDIVPRDEL KEEDVPWSGV 180 GVAGDPSVSY GGLYYPPTLQ QPLHHTMASP DMMVVQPSMP PNPQMMYQPP Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-53	75	167	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	145	RRTLQRN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369382.1	7e-93	nuclear transcription factor Y subunit C-2-like
Swissprot	Q9SMP0	2e-64	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A2R6X8T8	1e-168	A0A2R6X8T8_MARPO; Uncharacterized protein
STRING	PP1S315_9V6.3	3e-92	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	2e-56	nuclear factor Y, subunit C4

Link Out ? help Back to Top
Phytozome	Mapoly0029s0049.1.p

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]