PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0030s0141.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

bHLH

Protein Properties

Length: 470aa MW: 51924.2 Da PI: 5.4897

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0030s0141.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.1	1.2e-06	385	428	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++E+ RR+ri +++ eL+el+ + k + + +L ++++Y+ L Mapoly0030s0141.1.p 385 SIIEKTRRQRITEKLRELQELVHSV-----KPDNTVYMLDQVINYVEGL 428 689*****************997.....6799999****999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.696	379	428	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.72E-5	383	433	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-8	384	437	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.1E-9	384	443	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0083	385	434	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MELSNMSSIL EQHKENVDCE MTESLVNLDH YMALSAIQQV SYNCSSLSAL VKDHNYSPTS 60 NLESIDVNQL SPDSDNSDYL EPSNMSSSML MEMQELWPNY GNFSTGLSVQ SPQCLAPWEP 120 IFNPAPPQEL VSENLVHLTN VSQTVPTLSF DGKMGTSENL LQTGNDVIIQ NSSFPTASQA 180 NLVGTAIRIP DENRFVRSST ILPAAASLVE NRGSNTFPEA SDLRPLSKQT RTSPYPSSEE 240 KRAVHLVQLV NANQSKMHTP PSHSAGWKRP QHVYSSLGLD GTSTPSSEMM DSASPFLLPN 300 PKIRGDFSKG TLGQAPCMSG EKGKEATSSS KPTKPPEYLV GNMDGYGNPM AKNNKLKEKT 360 TQKKPDASIK CRSRSRPGVY TNPRSIIEKT RRQRITEKLR ELQELVHSVK PDNTVYMLDQ 420 VINYVEGLEN QIQVLLIQKG EYWNMDFSSM FQSASDESEL LKSGSFERG*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MELSNMSSIL EQHKENVDCE MTESLVNLDH YMALSAIQQV SYNCSSLSAL VKDHNYSPTS  60
NLESIDVNQL SPDSDNSDYL EPSNMSSSML MEMQELWPNY GNFSTGLSVQ SPQCLAPWEP  120
IFNPAPPQEL VSENLVHLTN VSQTVPTLSF DGKMGTSENL LQTGNDVIIQ NSSFPTASQA  180
NLVGTAIRIP DENRFVRSST ILPAAASLVE NRGSNTFPEA SDLRPLSKQT RTSPYPSSEE  240
KRAVHLVQLV NANQSKMHTP PSHSAGWKRP QHVYSSLGLD GTSTPSSEMM DSASPFLLPN  300
PKIRGDFSKG TLGQAPCMSG EKGKEATSSS KPTKPPEYLV GNMDGYGNPM AKNNKLKEKT  360
TQKKPDASIK CRSRSRPGVY TNPRSIIEKT RRQRITEKLR ELQELVHSVK PDNTVYMLDQ  420
VINYVEGLEN QIQVLLIQKG EYWNMDFSSM FQSASDESEL LKSGSFERG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A176WS33	0.0	A0A176WS33_MARPO; Uncharacterized protein
TrEMBL	A0A2R6X8J2	0.0	A0A2R6X8J2_MARPO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35460.1	1e-14	bHLH family protein

Link Out ? help Back to Top
Phytozome	Mapoly0030s0141.1.p