PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0032s0153.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 472aa    MW: 50800.4 Da    PI: 8.5618
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0032s0153.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.7e-172267147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEd  l ++v ++G ++W++I++ ++ gR++k+c++rw + 
  Mapoly0032s0153.1.p 22 KGPWSPEEDAALQRLVDKYGARNWSLISKGIP-GRSGKSCRLRWCNQ 67
                         79******************************.***********985 PP
2Myb_DNA-binding52.79.6e-1776118347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++T+ Ed  +++a++ +G++ W+tIar ++ gRt++ +k++w++ 
  Mapoly0032s0153.1.p  76 PFTAAEDAAIIQAHAHHGNK-WATIARLLP-GRTDNAIKNHWNST 118
                          89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.6361772IPR017930Myb domain
SuperFamilySSF466897.86E-3120115IPR009057Homeodomain-like
SMARTSM007174.1E-162170IPR001005SANT/Myb domain
PfamPF002494.0E-172267IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-242375IPR009057Homeodomain-like
CDDcd001675.71E-152466No hitNo description
PROSITE profilePS5129421.64973123IPR017930Myb domain
SMARTSM007171.1E-1473121IPR001005SANT/Myb domain
CDDcd001679.54E-1276119No hitNo description
Gene3DG3DSA:1.10.10.604.9E-2376122IPR009057Homeodomain-like
PfamPF002494.6E-1476118IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAVSPSTSLD FRCRTQDNER IKGPWSPEED AALQRLVDKY GARNWSLISK GIPGRSGKSC  60
RLRWCNQLSP QVQHRPFTAA EDAAIIQAHA HHGNKWATIA RLLPGRTDNA IKNHWNSTLR  120
RRYLAERSRA DEEGSYVCRI RDEDDLTSTL EARKQRCSID LESSGMAQQL SNEGSSFLDS  180
SSMCGSPLNT SQCAQQVKKL NFAPSSPSCS EHSDPTTVLA PQVFRPVPRP SAFTCFSPSS  240
TTSGGLTKQM QQSPQEASSS STDPPTSLSL SLPGTCANRI EREVSPRCSP TTRPTLPPPQ  300
PIAQAQHSPR SENHHHLRPH EQLKESPPHI SAIAWRQPAP PAEHLHEQSG FGIVNNGGAM  360
LVGQAAVPTD MMSAAVRAAV AQALQAPAAA APPARAAPMM GMGFGLDAAV NAGLLAMMRD  420
MVAKEVQKYM AAVQAPTCLP PFSVMGPDYA SLTSHPEFLG TMTPSVPRKA G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-39191221104MYB PROTO-ONCOGENE PROTEIN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00400DAPTransfer from AT3G50060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362152.11e-105transcription factor MYB77-like
TrEMBLA0A2R6X7C20.0A0A2R6X7C2_MARPO; Uncharacterized protein
STRINGPP1S10_267V6.11e-104(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.16e-52myb domain protein r1