PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0033s0095.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 794aa    MW: 83918.2 Da    PI: 8.4816
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0033s0095.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-056183123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         +kC++C+k +  +s++k H++t+
  Mapoly0033s0095.2.p 61 WKCEKCSKGYAVQSDYKAHLKTC 83
                         58*******************98 PP
2zf-C2H212.20.0005589109323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          C dCg++Fsr +++  H+ t+
  Mapoly0033s0095.2.p  89 CCDCGRVFSRVESFIEHQDTC 109
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-44882IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MHRRRHKVPW KLLKRQTTDT RKRVYVCPEP TCLHHDPSHA LGDLVGIKKH YRRKHSTDKQ  60
WKCEKCSKGY AVQSDYKAHL KTCGTRGHCC DCGRVFSRVE SFIEHQDTCT AAKEKSALQI  120
GGLVGGSQAN RGLADSPSSR SLSTECLSVD PSRSALSDSA VMPSCSEYGD MPVNSSSPSG  180
NQQHWMMLGD SRELQLLPEE SGGSRGSTSM MVMSSTSGGR RVIPVIELKC NTPPTAQSAG  240
GSGGGGGGGG GGGAETTPGL QLSIGPYSNT EDASNLRDKA SISMIGPSLP DVYEVKPVTA  300
TERAAFSSMQ QHRLQRRASE GSNSEVNTAV AGLGALQSLT SASLRGGGGG GGSGSALGGG  360
GLGSSVGHNG CGGIGDGLTL SSSSPPTTAT SCARGGGGEC SDVAQMHHLL KGPAGARKNV  420
SSNLLLAGVK ESSLLSRRRS RSPNQYQQYD MHNGQSDLVV VPASTECMGG AWGQANRQQN  480
APLTPTTPST TNGGTYVTDL ESETAIMPMR NRQYGGGGGG GAAAREHMEA AVRAMEEASR  540
HKDMASNARE MARPDVGSAW WTDLAAARRT KEQARVEREE AESQLAQAEL LKQEAREQMK  600
LASAEKTYAE HARENAKRQR ELAESELNSA KRVREQAQSD FAKAQMLKEQ ADRFMDAASG  660
RLSVAAVMSN QPSTDASSSA QSEQQQQNNN NNNSGSSSSS KNNQRQVPPC LDFTSLPLPN  720
FSSTSSPFQI STPPRYPSSM IPVTFIGTSA ICPPPMSLPP SFDTVCTTAA SHSTYSSSMV  780
TEGHLRTPKP EMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-1958117463Zinc finger protein JACKDAW
5b3h_F2e-1958117463Zinc finger protein JACKDAW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6X6F90.0A0A2R6X6F9_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.25e-68indeterminate(ID)-domain 14