PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0036s0107.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 1109aa    MW: 118670 Da    PI: 6.5384
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0036s0107.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.2e-1756102148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEde+l +av+ + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  Mapoly0036s0107.1.p  56 KGGWTPEEDEILRRAVQCFKGKNWKKIAEFFQ-DRTDVQCLHRWQKVL 102
                          688*****************************.************986 PP
2Myb_DNA-binding56.66.1e-18108154148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEd+++ ++v ++G + W+ Ia+ ++ gR +kqc++rw+++l
  Mapoly0036s0107.1.p 108 KGPWTKEEDDRIMELVGKYGAKKWSVIAQNLP-GRIGKQCRERWHNHL 154
                          79******************************.*************97 PP
3Myb_DNA-binding57.72.8e-18160204147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r++WT++Ed+ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++ 
  Mapoly0036s0107.1.p 160 RDAWTQQEDLALIHAHQIYGNK-WAEIAKFLP-GRTDNSIKNHWNST 204
                          789*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.22651102IPR017930Myb domain
SuperFamilySSF466894.28E-1754112IPR009057Homeodomain-like
SMARTSM007172.7E-1455104IPR001005SANT/Myb domain
PfamPF002495.8E-1556102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2358118IPR009057Homeodomain-like
CDDcd001675.00E-1359102No hitNo description
PROSITE profilePS5129432.302103158IPR017930Myb domain
SuperFamilySSF466893.95E-32105201IPR009057Homeodomain-like
SMARTSM007171.3E-16107156IPR001005SANT/Myb domain
PfamPF002495.1E-17108154IPR001005SANT/Myb domain
CDDcd001671.17E-14110154No hitNo description
Gene3DG3DSA:1.10.10.601.1E-26119161IPR009057Homeodomain-like
SMARTSM007174.9E-18159207IPR001005SANT/Myb domain
PROSITE profilePS5129423.754159209IPR017930Myb domain
PfamPF002492.6E-16160203IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-24162209IPR009057Homeodomain-like
CDDcd001671.84E-13162202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1109 aa     Download sequence    Send to blast
MFMIRAGGAM ATQDSQNKMR TGPVPSSSGA ESEDDAIHQL PPVHGRTGGP TRRSSKGGWT  60
PEEDEILRRA VQCFKGKNWK KIAEFFQDRT DVQCLHRWQK VLNPDLVKGP WTKEEDDRIM  120
ELVGKYGAKK WSVIAQNLPG RIGKQCRERW HNHLNPNIKR DAWTQQEDLA LIHAHQIYGN  180
KWAEIAKFLP GRTDNSIKNH WNSTMKKKVD PMSATDPISR ALAAYQAQQD SLKSGGSANS  240
EQSMCLSNTV DVVLPSTSGV SNSNLSARIM ASSTVPPSVR TCDVAEDSAV DSKPAIQLAA  300
PAGSQVPEKD DIKAVKSGSR KELGTASKPP LLPPPPPPRA SCAGNPLTQS TCDTVNCTPM  360
AVPVVSTSSS SLQRQPSSID ENVCVPSSVE LCRVPSFSRM YPLACSLPES TTCSGQSTPA  420
LTSLPLTSSV FGNGTMIGDV DSVSGSVIES VNMMAQPMTP MGYMTLHECH YSQHQRAEEL  480
SGPCLPPYSN NQKLCLRGDI SKVGTEEYSD ELLKAATQVV SDYQPLSMFA ELEPEVEDTE  540
GDAGFFYEPP RLPNSDMPFL NYDLISPNGT SLQAYSPLGV RQMIMPSVNC STPPSYPSSS  600
PFRGGSPQST LRRAAQSFGG TPSILRKRPR PLVSISRGNK EGEASGLQVR DSNMSGGCVQ  660
SSDNAADMAH DSACTVTPDR NTSNENSFLC RSFGSDSLMS ADISPCHARR FASPAYDLTS  720
KNLMKINRLE IENDFQSGSG YPSPGSNSSG GAHTRTKGGD GKSGGCVSGI KCNKRGRFRA  780
INPDYESKAI KGGGNQPSPK TQDLPVLVEQ RQNGQQACFS VEASSMTSCV LMAPGAEAYG  840
GAGSFGGVTG RYGCCDSKSQ YEAGHVGSHA AVVGSQPKGS DKRENMALNS VSSFNAWGSA  900
ISPTVSGSNH GGKDWFNALA DFDTFNFALS GDGNSPSAIW RSPWKLDPAV PKDGVMSLLE  960
GMDMLVEDGS DDALGIMKHI SEHAAPAYSE AQEVLAKSVL MECHGRAASP NPVHRSRQEG  1020
SNEYKENVRS MNEHVDNCPS SPFVSWIVPF PAEMLSPDAA AGGTPLRGSS LGHSLQVAGG  1080
VDDNQLTFGG VSMVDPFSPS LYLLRECR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-72562096159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-72562096159MYB PROTO-ONCOGENE PROTEIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1626630KRPRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1903101e-63AF190310.1 Marchantia polymorpha c-myb-like transcription factor (MYB3R-1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6X4U00.0A0A2R6X4U0_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.21e-90myb domain protein 3r-4