PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0036s0144.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 976aa    MW: 105546 Da    PI: 7.3867
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0036s0144.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-09510530526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +Cr++a+ G+C++Gd C+F H 
  Mapoly0036s0144.1.p 510 ICRYYAQ-GYCSRGDACPFLHT 530
                          8******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.516505532IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-7507530IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-6507531IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-6509531IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-7510530IPR000571Zinc finger, CCCH-type
PROSITE profilePS5030398.368634975IPR033133Pumilio homology domain
Gene3DG3DSA:1.25.10.101.4E-122647972IPR011989Armadillo-like helical
SuperFamilySSF483711.9E-109648971IPR016024Armadillo-type fold
CDDcd079207.22E-152654970IPR033712Pumilio, RNA binding domain
SMARTSM000251.7E-5657692IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.364657692IPR001313Pumilio RNA-binding repeat
PfamPF008062.4E-6659691IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030213.05693728IPR001313Pumilio RNA-binding repeat
SMARTSM000257.6E-11693728IPR001313Pumilio RNA-binding repeat
PfamPF008063.0E-11693727IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.734729767IPR001313Pumilio RNA-binding repeat
SMARTSM000250.0051731767IPR001313Pumilio RNA-binding repeat
PfamPF008063.5E-6733761IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.737768803IPR001313Pumilio RNA-binding repeat
SMARTSM000253.6E-6768803IPR001313Pumilio RNA-binding repeat
PfamPF008065.2E-8768802IPR001313Pumilio RNA-binding repeat
SMARTSM000251.7E-5804839IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.037804839IPR001313Pumilio RNA-binding repeat
PfamPF008065.7E-7808837IPR001313Pumilio RNA-binding repeat
SMARTSM000255.8840874IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.151840875IPR001313Pumilio RNA-binding repeat
PfamPF008062.7E-5841863IPR001313Pumilio RNA-binding repeat
SMARTSM000258.9E-4876911IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.201876911IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.057912949IPR001313Pumilio RNA-binding repeat
SMARTSM000256.9914949IPR001313Pumilio RNA-binding repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 976 aa     Download sequence    Send to blast
MEQDDEEFEQ LLGEIPRATS APPHLEELQR AYGAELNNSP FVASLREDNL SPPVKPFIDI  60
RCDEQYENFY RNYSGVKKLP PPMENRNLYA DYPLMSPKAS SGNNHLSPFY SGLALDSPRT  120
MAGMRRQKQE PMANQMGAST NSSNNSGRTA SPPSDHHHPP KSADERSISA AFGNLSFEES  180
PSNGMMGGRL HEENVGPGES RGQPNGGLDH GGPMPNGRSA AISNGLYSHM SAFSTGFAPE  240
PPGGPLDAFG NPRPGVPSAT MDLFAQKSAG PSPLEAPSNG GGYAGLEEFG GPVSHQALEK  300
FLRRGSPPGL DAHAFNGAAA RQANGLMVDA GGFAGVGGST SAAHHQHQLE AYTAAALQAA  360
RLMNPGNGSD LYSGMEFNSN ARALYSHRLH QQIDAEQRLR ERQYQLQQHQ QSMRFYASLQ  420
AHTNGGLGPA SASRGHSPTG NSSAMRQTAL LSSSAGAGAG AGAAPGSAAH HLKTVRSHEQ  480
LWTVPGAGGG ASVIGHSNGE LGRASLNNSI CRYYAQGYCS RGDACPFLHT QASQGFGSVR  540
VTPGNTFKEA GREDRLISDN KMLPRRGASR AAAAPAISAS ALQRRKPESL PNGTTPHING  600
HAYVNGHHPS PISFHGDVQN HIHGEHNLEY EGPRHAIVGT PHLSQQNQQP KYNTLEEVEG  660
RIFSIAKDQH GCRFLQRKFD EGGPEDVQKI FQEIIEHIIE LMTDPFGNYL VQKLLEVCNE  720
EQRMEILHVV TEKGELVQIS LNMHGTRAVQ KLIETLKSPE QVAMVIASLK QGVVTLIKDL  780
NGNHVVQRCL QRLSTEDSQF IFDAAAVHCV EIATHRHGCC VLQRCVDFAS GPQRQRLVTE  840
IAANALVLSQ DPFGNYVVQY ILDLGMPWAS VEVMVRLEGN YPYLAMQKFS SNVVEKCLKL  900
AGDENRSRIV RELMGSPRLG QMLQDPYANY VVQSALTVAK GSLHTGLVEA IRPHLSVLRS  960
SPYGKRILSR TNLKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dzs_A3e-7865497329355Pumilio homology domain family member 4
4dzs_B3e-7865497329355Pumilio homology domain family member 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375670.10.0uncharacterized protein LOC112282379
TrEMBLA0A2R6X4Z30.0A0A2R6X4Z3_MARPO; Uncharacterized protein
STRINGPP1S41_292V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP82856