PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0037s0007.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

bHLH

Protein Properties

Length: 530aa MW: 56539.8 Da PI: 7.3714

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0037s0007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.3	5.4e-08	333	380	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++s q Mapoly0037s0007.1.p 333 SHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSIQ 380 8***********************9....556************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.88E-10	327	384	No hit	No description
SuperFamily	SSF47459	7.59E-16	327	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.154	329	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-15	329	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-5	333	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.0E-9	335	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MDVSECYPSS LTSLLPNVTG ALPYPCSPGV NAGPINQDFR LTRSVSGSLI PSSQQRLGME 60 KSMPLGSGWN SVDHGNLGLT VDPAKGGFAL QGVGLPSSPI ARFSSNPGFA ERAARFSAFG 120 NGHFSQSYSH SDNGSVRSGS YENENKATKL SARGEISTGG IGSPEVSGRS QANALDVGND 180 GEDTKSRLYR STSAACSPAQ TDEGCNAHDN ERPVVGSPSE SGATNGSGGQ ETSKTDADQG 240 RSTAAQLSGK KRKASGDEAV KETASPVTKE QKNSGAQSKR SKGAEDKEDQ KSKAERSDNS 300 SSSSLAAKDS KHVDHPKTDY IHVRARRGQA TDSHSLAERV RREKISERMK FLQDLVPGCS 360 KVTGKAVMLD EIINYVQSIQ RQVELLSMKL AAVTPRPDFN IDNFLTKQLQ IGQNCGLPNM 420 VEHTESTIQY PQLPSLHSQQ SLHMQQVLSN VLDNSQSVES KLMRMNSAPP MSLPRAHMDI 480 FGDGLSQLTG LWEGDLQSVV QMGFTQGRPM TGLGGFQCDL PPGHMKIEI*

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MDVSECYPSS LTSLLPNVTG ALPYPCSPGV NAGPINQDFR LTRSVSGSLI PSSQQRLGME  60
KSMPLGSGWN SVDHGNLGLT VDPAKGGFAL QGVGLPSSPI ARFSSNPGFA ERAARFSAFG  120
NGHFSQSYSH SDNGSVRSGS YENENKATKL SARGEISTGG IGSPEVSGRS QANALDVGND  180
GEDTKSRLYR STSAACSPAQ TDEGCNAHDN ERPVVGSPSE SGATNGSGGQ ETSKTDADQG  240
RSTAAQLSGK KRKASGDEAV KETASPVTKE QKNSGAQSKR SKGAEDKEDQ KSKAERSDNS  300
SSSSLAAKDS KHVDHPKTDY IHVRARRGQA TDSHSLAERV RREKISERMK FLQDLVPGCS  360
KVTGKAVMLD EIINYVQSIQ RQVELLSMKL AAVTPRPDFN IDNFLTKQLQ IGQNCGLPNM  420
VEHTESTIQY PQLPSLHSQQ SLHMQQVLSN VLDNSQSVES KLMRMNSAPP MSLPRAHMDI  480
FGDGLSQLTG LWEGDLQSVV QMGFTQGRPM TGLGGFQCDL PPGHMKIEI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6X3Z0	0.0	A0A2R6X3Z0_MARPO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	6e-58	bHLH family protein

Link Out ? help Back to Top
Phytozome	Mapoly0037s0007.1.p