PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0037s0146.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

Trihelix

Protein Properties

Length: 313aa MW: 35001.6 Da PI: 8.4531

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0037s0146.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.7e-07	59	121	3	47
SS-HHHHHHHHHHHHHTTTT...............-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...............tWktIartmg...kgRtlkqcksrwqky 47 +WT E + l+da k+ + W+ +a +m gR++ qc+++w + Mapoly0037s0146.1.p 59 PWTVSEMLTLIDAKKEERERcqmyklqgvklpaaeKWRIVATHMEtkdMGRSGSQCQDKWENM 121 7***********************************************************987 PP
2	trihelix	51.3	3.1e-16	60	147	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 Wt +e l+Li+a++e er + k ++ +W+ v+ +m+ + + rs qC++kwen+ k+yk+++e++ +++ + yf+++ Mapoly0037s0146.1.p 60 WTVSEMLTLIDAKKEERERCQMYKlqgvklPAAEKWRIVATHMETKDMGRSGSQCQDKWENMMKDYKAVREWQYIMNPTGK---NYFKEM 146 *******************86555566689**************************************998755554...789998 PP trihelix 86 e 86 + Mapoly0037s0146.1.p 147 T 147 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.246	52	122	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	9.4E-7	55	123	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-4	56	124	IPR001005	SANT/Myb domain
Pfam	PF13837	1.8E-17	58	147	No hit	No description
SuperFamily	SSF46689	1.96E-5	85	136	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEGENGEASD PTQEVATLNL SACPHTPSAF PTPATSDCNG GPGGARTQSN NKKRSRSAPW 60 TVSEMLTLID AKKEERERCQ MYKLQGVKLP AAEKWRIVAT HMETKDMGRS GSQCQDKWEN 120 MMKDYKAVRE WQYIMNPTGK NYFKEMTNKE RKDASLPPQM DEVVFYSLHA IQNEKEEKKD 180 KARRKIERDS FKQPNVGNSL PVGTLATKDK VGSSEANDME SMDTDSSGKR RRRKKVGQDK 240 PPIGLENPVV LDDFVHAMKD GSKELVECFM KVLERNERQP SGELDTKTKD TATLAQVLVA 300 LADAVKTIAE KL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	233	KRRRRK
2	228	234	KRRRRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024400407.1	1e-128	trihelix transcription factor ASR3-like
TrEMBL	A0A176VKP3	0.0	A0A176VKP3_MARPO; Uncharacterized protein
TrEMBL	A0A2R6X4G5	0.0	A0A2R6X4G5_MARPO; Uncharacterized protein
STRING	PP1S148_18V6.1	1e-127	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP15280	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-14	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Mapoly0037s0146.1.p