PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0039s0003.1.p
Common NameRSL1
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 707aa    MW: 76043.2 Da    PI: 5.4977
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0039s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.5e-09585627855
                          HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + r RR+ri +++ +L++l+P+       K++ +++LekA++Y+k Lq
  Mapoly0039s0003.1.p 585 AARHRRERISERLKTLQDLVPNG-----SKVDLVTMLEKAINYVKFLQ 627
                          6799******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.20E-10574631No hitNo description
PROSITE profilePS5088815.186577626IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-14581639IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-12582635IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12583632IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6585627IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MMSSRTLTLS RRNNMEGVLQ VAKSPNHENQ SSLQTWQCDQ ESTEFDTGSA GNLLSAQVAA  60
ASLASSSPES GPESDLLPSE LQNLESGNLL SNDVPSSNPT ANFLLPKSSI WGTGDSEYSW  120
AQESLSRSSG SMDDSSLLTS DTLGNDTSRL VETPKTDPLL PQWASQLPNT TQSSASIQPP  180
TQMFQRRSWQ TSDDHTSLGL IPTINMQAYN TSFPALSSSS GGGMSLDATK FNMDYLGGER  240
SCNMGNFEGT SVYDSVARKL HCQMSGLETS SGSDFSSGSG ISTLGFASLQ MGQSQGITDS  300
SENNVSSGLF LQQGLMQQKN YNGVSTMNHD KSSYLSSNSR VYFNQSSSST LDTTNTIMNT  360
STSNQRFGEN MHSPKLLLES LSGNSVLRNL ETNISGSHNP SESVLGSHGY LYSTQKKVDT  420
LESLRKWPNN ASGNGVKDVT ANPTIGNLGR FSSYNSNGDK EDALYDTWPP SSVGQNHALD  480
PVPETDSRKR FLQMSLGQPN DTNHKRLHLD TSPNVQTTVA PTTLKRSSSW ASSLTSTCSK  540
TVDAINPGPL PYTKSNSRHA VGPALNTNLK PRARQGSAND PQSIAARHRR ERISERLKTL  600
QDLVPNGSKV DLVTMLEKAI NYVKFLQLQV KVLTTDDYWP SNEKGAAPCT ALPNFEDMEG  660
ALKVLVAQAE KEANSNLSNT TSNNGGNSSS SSQENKSPNQ ADNNSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT6338270.0KT633827.1 Marchantia polymorpha RSL class 1 bHLH transcription factor (RSL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VPU80.0A0A176VPU8_MARPO; Uncharacterized protein
TrEMBLA0A2R6X3030.0A0A2R6X303_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.12e-32RHD SIX-LIKE 1
Publications ? help Back to Top
  1. Proust H, et al.
    RSL Class I Genes Controlled the Development of Epidermal Structures in the Common Ancestor of Land Plants.
    Curr. Biol., 2016. 26(1): p. 93-9
    [PMID:26725198]