PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0039s0068.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 402aa    MW: 42997.1 Da    PI: 6.2496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0039s0068.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13215261354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+ErrRR+riN+ +++Lr  lP++     +K +Ka+ L ++++++k L
  Mapoly0039s0068.1.p 215 KSHSEAERRRRERINTHLATLRNNLPSS-----TKTDKASLLGEVIDHLKFL 261
                          79*************************9.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.488212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-11215261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-14216266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-13216267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-14218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.78E-5225264No hitNo description
Gene3DG3DSA:3.30.70.2603.9E-5298360No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGGEATGRLD LCSQWQITPD SGFIRPFNKP VLEEPNFAMP ALPNSGVWPG AQSLATCTSS  60
GPSALFSVST AAASRGLLDH HTASRSMQFN HLLPKQEAFI SSNFPSMLGQ STSSLGYDRL  120
PQTQLFGSPL LPNAEHQLVG RSSLNSFSYD DGLVHGSSSS GASRERGKQQ LPPPSGPAQA  180
NGGSLVLDVS KGELINLSKL TPQEILDAKA LAASKSHSEA ERRRRERINT HLATLRNNLP  240
SSTKTDKASL LGEVIDHLKF LKRQAADIAE GGPVPSDVDE LTVDVDPSSS EIGDGRTYYR  300
ASLCCDDRPD LYPDLMRTLH TLRLQTVKAE IATLGGRIKN VLLMTRSDEG SDEDDKEALS  360
VSSVMEALRA VMERSGLGDQ SPGSSNKRQR LASLDSSSPS M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220225ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002978655.21e-79transcription factor bHLH30
SwissprotQ9S7Y15e-59BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2R6X3980.0A0A2R6X398_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]